Design Package


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Documentation for package ‘Design’ version 2.3-0

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A B C D E F G H I L M N O P Q R S T U V W

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%ia% Design Special Transformation Functions

-- A --

anova.Design Analysis of Variance (Wald and F Statistics)
asis Design Special Transformation Functions

-- B --

bj Buckley-James Multiple Regression Model
bj.fit Buckley-James Multiple Regression Model
bjplot Buckley-James Multiple Regression Model
bootcov Bootstrap Covariance and Distribution for Regression Coefficients
bootplot Bootstrap Covariance and Distribution for Regression Coefficients
bootplot.bootcov Bootstrap Covariance and Distribution for Regression Coefficients

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calibrate Resampling Model Calibration
calibrate.cph Resampling Model Calibration
calibrate.default Resampling Model Calibration
calibrate.psm Resampling Model Calibration
catg Design Special Transformation Functions
confplot Bootstrap Covariance and Distribution for Regression Coefficients
confplot.bootcov Bootstrap Covariance and Distribution for Regression Coefficients
contrast General Contrasts of Regression Coefficients
contrast.Design General Contrasts of Regression Coefficients
cph Cox Proportional Hazards Model and Extensions
cr.setup Continuation Ratio Ordinal Logistic Setup

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datadensity Plot Effects of Variables
datadensity.plot.Design Plot Effects of Variables
datadist Distribution Summaries for Predictor Variables
Design Design Methods and Generic Functions
Design.Misc Miscellaneous Design Attributes and Utility Functions
Design.Overview Overview of Design Library
Design.trans Design Special Transformation Functions
DesignFit Miscellaneous Design Attributes and Utility Functions
DesignOverview Overview of Design Library

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effective.df Trace AIC and BIC vs. Penalty

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fastbw Fast Backward Variable Selection
Function.cph Compose an S Function to Compute X beta from a Fit
Function.Design Compose an S Function to Compute X beta from a Fit

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gendata Generate Data Frame with Predictor Combinations
gendata.default Generate Data Frame with Predictor Combinations
gendata.Design Generate Data Frame with Predictor Combinations
Getlim Miscellaneous Design Attributes and Utility Functions
Getlimi Miscellaneous Design Attributes and Utility Functions
glmD Design Version of glm
glsD Fit Linear Model Using Generalized Least Squares
groupkm Kaplan-Meier Estimates vs. a Continuous Variable

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Hazard Parametric Survival Model
Hazard.psm Parametric Survival Model
hazard.ratio.plot Hazard Ratio Plot
histdensity Bootstrap Covariance and Distribution for Regression Coefficients

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ie.setup Intervening Event Setup
interactions.containing Miscellaneous Design Attributes and Utility Functions

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latex LaTeX Representation of a Fitted Model
latex.anova.Design Analysis of Variance (Wald and F Statistics)
latex.bj LaTeX Representation of a Fitted Model
latex.cph LaTeX Representation of a Fitted Cox Model
latex.Design LaTeX Representation of a Fitted Model
latex.glmD LaTeX Representation of a Fitted Model
latex.glsD LaTeX Representation of a Fitted Model
latex.lrm LaTeX Representation of a Fitted Cox Model
latex.ols LaTeX Representation of a Fitted Cox Model
latex.pphsm LaTeX Representation of a Fitted Cox Model
latex.psm LaTeX Representation of a Fitted Cox Model
latex.summary.Design Summary of Effects in Model
latexDesign LaTeX Representation of a Fitted Model
Legend Plot Effects of Variables
Legend.default Plot Effects of Variables
legend.nomabbrev Draw a Nomogram
Legend.plot.Design Plot Effects of Variables
lines.perimeter Plot Effects of Variables
lines.residuals.psm.censored.normalized Parametric Survival Model
lrm Logistic Regression Model
lrm.fit Logistic Model Fitter
lrtest Miscellaneous Design Attributes and Utility Functions
lsp Design Special Transformation Functions

-- M --

matinv Total and Partial Matrix Inversion using Gauss-Jordan Sweep Operator
matrx Design Special Transformation Functions
Mean.cph Cox Proportional Hazards Model and Extensions
Mean.lrm Predicted Values for Binary and Ordinal Logistic Models
Mean.psm Parametric Survival Model

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Newlabels Miscellaneous Design Attributes and Utility Functions
Newlabels.Design Miscellaneous Design Attributes and Utility Functions
Newlevels Miscellaneous Design Attributes and Utility Functions
Newlevels.Design Miscellaneous Design Attributes and Utility Functions
nomogram Draw a Nomogram
nomogram.Design Draw a Nomogram
num.intercepts Miscellaneous Design Attributes and Utility Functions

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ols Linear Model Estimation Using Ordinary Least Squares
oos.loglik Miscellaneous Design Attributes and Utility Functions
oos.loglik.cph Miscellaneous Design Attributes and Utility Functions
oos.loglik.glmD Miscellaneous Design Attributes and Utility Functions
oos.loglik.lrm Miscellaneous Design Attributes and Utility Functions
oos.loglik.ols Miscellaneous Design Attributes and Utility Functions
oos.loglik.psm Miscellaneous Design Attributes and Utility Functions

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param.order Miscellaneous Design Attributes and Utility Functions
pbind Imputation of Repeated Measures
Penalty.matrix Miscellaneous Design Attributes and Utility Functions
Penalty.setup Miscellaneous Design Attributes and Utility Functions
pentrace Trace AIC and BIC vs. Penalty
perimeter Plot Effects of Variables
plot.anova.Design Analysis of Variance (Wald and F Statistics)
plot.calibrate Resampling Model Calibration
plot.calibrate.default Resampling Model Calibration
plot.Design Plot Effects of Variables
plot.lrm.partial Residuals from a Logistic Regression Model Fit
plot.pentrace Trace AIC and BIC vs. Penalty
plot.sensuc Sensitivity to Unmeasured Covariables
plot.summary.Design Summary of Effects in Model
plot.val.prob Validate Predicted Probabilities
plot.val.surv Validate Predicted Probabilities
plot.validate.tree Dxy and Mean Squared Error by Cross-validating a Tree Sequence
plot.xmean.ordinaly Plot Mean X vs. Ordinal Y
pol Design Special Transformation Functions
pphsm Parametric Proportional Hazards form of AFT Models
predab.resample Predictive Ability using Resampling
predict.bj Predicted Values from Model Fit
predict.cph Predicted Values from Model Fit
predict.Design Predicted Values from Model Fit
predict.glmD Predicted Values from Model Fit
predict.glsD Predicted Values from Model Fit
predict.lrm Predicted Values for Binary and Ordinal Logistic Models
predict.ols Predicted Values from Model Fit
predict.psm Predicted Values from Model Fit
predictDesign Predicted Values from Model Fit
print.anova.Design Analysis of Variance (Wald and F Statistics)
print.bj Buckley-James Multiple Regression Model
print.calibrate Resampling Model Calibration
print.calibrate.default Resampling Model Calibration
print.contrast.Design General Contrasts of Regression Coefficients
print.cph Print cph Results
print.cph.fit Print cph.fit
print.datadist Distribution Summaries for Predictor Variables
print.Design Miscellaneous Design Attributes and Utility Functions
print.fastbw Fast Backward Variable Selection
print.glmD Design Version of glm
print.glsD Fit Linear Model Using Generalized Least Squares
print.lrm Print lrm
print.lrtest Miscellaneous Design Attributes and Utility Functions
print.nomogram Draw a Nomogram
print.ols Print ols
print.pentrace Trace AIC and BIC vs. Penalty
print.plot.Design Plot Effects of Variables
print.pphsm Parametric Proportional Hazards form of AFT Models
print.psm Parametric Survival Model
print.specs.Design Design Specifications for Models
print.summary.Design Summary of Effects in Model
print.survest.psm Parametric Survival Estimates
print.val.prob Validate Predicted Probabilities
print.validate.tree Dxy and Mean Squared Error by Cross-validating a Tree Sequence
psm Parametric Survival Model

-- Q --

Quantile.cph Cox Proportional Hazards Model and Extensions
Quantile.psm Parametric Survival Model

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rcs Design Special Transformation Functions
related.predictors Miscellaneous Design Attributes and Utility Functions
residuals.bj Buckley-James Multiple Regression Model
residuals.cph Residuals for a cph Fit
residuals.Design Miscellaneous Design Attributes and Utility Functions
residuals.lrm Residuals from a Logistic Regression Model Fit
residuals.ols Residuals for ols
residuals.psm Parametric Survival Model
rm.impute Imputation of Repeated Measures
robcov Robust Covariance Matrix Estimates

-- S --

sascode Compose an S Function to Compute X beta from a Fit
scored Design Special Transformation Functions
sensuc Sensitivity to Unmeasured Covariables
show.influence Which Observations are Influential
specs Design Specifications for Models
specs.Design Design Specifications for Models
strat Design Special Transformation Functions
summary.Design Summary of Effects in Model
Surv.event Accessors for survivals Surv object.
Surv.strata Accessors for survivals Surv object.
Surv.time Accessors for survivals Surv object.
survdiffplot Plot Survival Curves and Hazard Functions
survest Cox Survival Estimates
survest.cph Cox Survival Estimates
survest.psm Parametric Survival Estimates
survfit.cph Cox Predicted Survival
survfit.formula Compute a Survival Curve for Censored Data
Survival Parametric Survival Model
Survival.cph Cox Proportional Hazards Model and Extensions
Survival.psm Parametric Survival Model
survplot Plot Survival Curves and Hazard Functions
survplot.Design Plot Survival Curves and Hazard Functions
survplot.residuals.psm.censored.normalized Parametric Survival Model
survplot.survfit Plot Survival Curves and Hazard Functions

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text.anova.Design Analysis of Variance (Wald and F Statistics)

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univarLR Miscellaneous Design Attributes and Utility Functions

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val.prob Validate Predicted Probabilities
val.surv Validate Predicted Probabilities
validate Resampling Validation of a Fitted Model's Indexes of Fit
validate.bj Buckley-James Multiple Regression Model
validate.cph Validation of a Fitted Cox or Parametric Survival Model's Indexes of Fit
validate.lrm Resampling Validation of a Logistic Model
validate.ols Validation of an Ordinary Linear Model
validate.psm Validation of a Fitted Cox or Parametric Survival Model's Indexes of Fit
validate.rpart Dxy and Mean Squared Error by Cross-validating a Tree Sequence
validate.tree Dxy and Mean Squared Error by Cross-validating a Tree Sequence
Varcov.cph Miscellaneous Design Attributes and Utility Functions
Varcov.glmD Miscellaneous Design Attributes and Utility Functions
Varcov.glsD Miscellaneous Design Attributes and Utility Functions
Varcov.lrm Miscellaneous Design Attributes and Utility Functions
Varcov.ols Miscellaneous Design Attributes and Utility Functions
Varcov.pphsm Parametric Proportional Hazards form of AFT Models
Varcov.psm Miscellaneous Design Attributes and Utility Functions
vif Variance Inflation Factors

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which.influence Which Observations are Influential