PKG=LNFr-ape ARCH=i386 VERSION=2.4 SERIALNUM=001 NAME=R:ape - Analyses of Phylogenetics and Evolution CATEGORY=misc,graphics,util,application EMAIL=developers@linofee.org VENDOR=LINOFEE, http://www.linofee.org BASEDIR=/opt DESC=R library: ape provides functions for reading, writing, plotting, and manipulating phylogenetic trees, analyses of comparative data in a phylogenetic framework, analyses of diversification and macroevolution, computing distances from allelic and nucleotide data, reading nucleotide sequences, and several tools such as Mantel's test, computation of minimum spanning tree, generalized skyline plots, estimation of absolute evolutionary rates and clock-like trees using mean path lengths, non-parametric rate smoothing and penalized likelihood. Phylogeny estimation can be done with the NJ, BIONJ, and ME methods. LICINFO=GNU General Public License, Version 2, June 1991 LICURL=http://www.gnu.org/licenses/gpl.html LICFILE=gpl.txt PSTAMP=idev220100110161326 CLASSES=none