2009-10-22  warnes

	* [r1362] R/heatmap.2.R: Fix transposed display of data (but not
	  labels) in heatmap.2 when symm=TRUE

2009-10-12  warnes

	* [r1361] DESCRIPTION, inst/NEWS: Update version number to 2.7.2,
	  2.7.1 was already up but apparently DESCRIPTION wasn't commited
	  with change.

2009-10-10  warnes

	* [r1360] R/col2hex.R, man/colorpanel.Rd, man/lowess.Rd,
	  man/ooplot.Rd, man/overplot.Rd, man/smartlegend.Rd, man/space.Rd,
	  tests/heatmap2Test.Rout.save: Various minor changes to remove new
	  R CMD CHECK warnings.
	* [r1359] DESCRIPTION, inst/NEWS: Update DESCRIPTION and NEWS file
	  for 2.7.1
	* [r1358] R/col2hex.R: Fix bug reported by Ken Lo: col2hex had blue
	  and green components swapped.

2009-05-08  warnes

	* [r1324] tests/heatmap_to_heatmap.2_test.R: Add test of using a
	  dendrogram created by heatmap() with heatmap.2()
	* [r1323] R/heatmap.2.R: heatmap.2: handle NA for RowV or ColV the
	  same way as NULL
	* [r1322] man/plotCI.Rd: Fix typo
	* [r1321] inst/NEWS: Update NEWS for release 2.7.0
	* [r1320] inst/ChangeLog: We don't want the Changelog in svn, since
	  it is autogenerated from svn logs!
	* [r1319] man/balloonplot.Rd, man/bandplot.Rd, man/boxplot.n.Rd,
	  man/colorpanel.Rd, man/hist2d.Rd, man/ooplot.Rd, man/overplot.Rd,
	  man/plot.lm2.Rd, man/plotCI.Rd, man/plotmeans.Rd,
	  man/residplot.Rd, man/sinkplot.Rd, man/smartlegend.Rd,
	  man/space.Rd, man/textplot.Rd, man/wapply.Rd: Update Greg's email
	  address to 'greg@random-technologies-llc.com'
	* [r1318] R/plotCI.R, man/plotCI.Rd: plotCI now properly handles
	  'NULL' and 'NA' values for ui, li, uiw, and liw.
	* [r1317] R/heatmap.2.R, man/heatmap.2.Rd,
	  tests/heatmap2Test.Rout.save: heatmap.2: Add option to create
	  breakpoints symmetric around 0, provide additional information in
	  the return value
	* [r1316] man/space.Rd: Fix Rd syntax error

2009-04-22  warnes

	* [r1315] man/barplot2.Rd, man/ooplot.Rd: VADeaths data set has
	  move to dataset package

2008-08-14  warnes

	* [r1302] R/balloonplot.R: balloonpot() was incorrectly displaying
	  warning about z values below 0 when scale.method="relative".
	  Fixed.

2008-08-07  warnes

	* [r1301] DESCRIPTION, NAMESPACE, inst/ChangeLog, inst/NEWS: Update
	  DESCRIPTION NAMESPACE and NEWS for 2.7.0 release

2008-06-16  warnes

	* [r1296] TODO, inst/TODO: Add TODO list to gplots

2008-05-20  warnes

	* [r1274] DESCRIPTION, man/plot.lm2.Rd: Update man page to match
	  recent changes to plot.lm2()
	* [r1273] man/venn.Rd: More work on documentation for venn()
	* [r1272] R/bandplot.R, man/bandplot.Rd: Fix code/doc mismatch due
	  to recent changes to bandplot()
	* [r1271] DESCRIPTION, NAMESPACE, R/venn.R, man/venn.Rd: Add Venn
	  Diagram plot submitted by Steffen Moeller

2008-05-07  warnes

	* [r1264] DESCRIPTION, R/bandplot.R: Improve performance of
	  bandplot by calculating running standard deviation using
	  caTools::runsd() instead of (ver slow) window() call. In addtion,
	  the standard deviations are now only calculated once, rather than
	  once for each band.
	* [r1263] R/plot.lm.R: Improve performance of plot.lm for large lm
	  objects by using fitted() instead of predict() to get y-hat

2008-05-05  warnes

	* [r1262] DESCRIPTION, R/bandplot.R: Use caTools's runsd in
	  bandplot for a dramatic speedup for large data
	* [r1261] NAMESPACE: Add import of gtools::reorder.factor for
	  ballonplot man page
	* [r1260] R/balloonplot.R, man/balloonplot.Rd: balloonplot: Add
	  option to scale balloons so [min,max]->[0,1] (relative) or so
	  [0,max] <- [0,1] (absolute)

2008-04-07  warnes

	* [r1254] man/barplot2.Rd: Fix typo in barplot2() man page
	* [r1253] DESCRIPTION, inst/ChangeLog, inst/NEWS: Updates for
	  gplots 2.6.0
	* [r1252] R/heatmap.2.R, man/heatmap.2.Rd: Add ability to control
	  location of individual heatmap.2 components

2008-03-27  warnes

	* [r1251] R/heatmap.2.R: Fix bug in handling rowsep, per suggestion
	  by Steven Paugh

2008-01-04  warnes

	* [r1238] man/overplot.Rd: Fix examples for overplot()

2008-01-02  warnes

	* [r1237] man/barplot2.Rd: Update Marc's email address

2007-12-20  warnes

	* [r1235] man/heatmap.2.Rd: Two letter clarification of help text
	  for heatmap.2()
	* [r1234] man/ooplot.Rd: Restore plot layout at end of ooplot()
	  example

2007-11-06  warnes

	* [r1222] man/hist2d.Rd: Remove extraneous closing brace in the
	  hist2d documentation file

2007-11-05  warnes

	* [r1221] inst/NEWS: Fix typo in NEWS: col2hex() is the new
	  function, not col2rgb() which is part of grDevices

2007-11-02  warnes

	* [r1219] DESCRIPTION, NAMESPACE, inst/ChangeLog, inst/NEWS:
	  Updates for gplots 2.5.0
	* [r1218] tests/heatmap2Test.Rout.save: Update saved test output
	  due to changes in how R reports warnings
	* [r1217] ChangeLog, NEWS: Create soft links of gmodels/ChangeLog
	  -> gmodels/inst/ChangeLog, and gmodels/NEWS -> gmodels/inst/NEWS
	  for my convenience
	* [r1216] ChangeLog, NEWS, inst/ChangeLog, inst/NEWS: Move actual
	  ChangeLog and NEWS files to gmodels/inst so they will be copied
	  into the installed R package area
	* [r1215] man/bandplot.Rd, man/textplot.Rd: Fix code/doc mismatches
	* [r1214] R/plot.lm.R: Update plot.lm2 to match changes made to
	  bandplot

2007-11-01  warnes

	* [r1213] ChangeLog, DESCRIPTION, R/replaceTabs.R, R/textplot.R: in
	  textplot(), convert tab characters to spaces before processing to
	  avoid problems with computing height and width of text including
	  tabs when using pdf()
	* [r1212] R/overplot.R, man/overplot.Rd: Minor reformatting of
	  overplot code and docs

2007-10-22  warnes

	* [r1196]
	  branches/GenerateFORMATSfromFactorObjects/SASxport/DESCRIPTION,
	  trunk/MSOfficeUtil/DESCRIPTION, trunk/RMCMC/DESCRIPTION,
	  trunk/Rlsf/DESCRIPTION, trunk/SASxport/DESCRIPTION,
	  trunk/bwRF/DESCRIPTION, trunk/exp.ssize/DESCRIPTION,
	  trunk/fork/DESCRIPTION, trunk/gdata/DESCRIPTION,
	  trunk/gmodels/DESCRIPTION, DESCRIPTION,
	  trunk/gregmisc/DESCRIPTION, trunk/ssize/DESCRIPTION: Clarify GPL
	  version

2007-08-14  warnes

	* [r1141] R/balloonplot.R: Correct error in balloonplot when z
	  contains NA values.
	* [r1140] R/balloonplot.R, man/balloonplot.Rd: Augment
	  balloonplot() with control of character size and color for text
	  and label items
	* [r1139] R/balloonplot.R: Correct balloonplot.default to properly
	  show specified x and y axis labels when explicitly provided

2007-03-09  ggorjan

	* [r1073] man/ooplot.Rd: use of \method in Rd markup - issues a
	  warning with _R_CHECK_RD_STYLE_=TRUE env. variable with R 2.5.0

2007-02-08  warnes

	* [r1052] DESCRIPTION: Bump version number
	* [r1051] man/textplot.Rd: Update documentation for textplot()
	* [r1050] R/col2hex.R, man/col2hex.Rd: Add col2rgb() function to
	  convert color names to rgb hex codes
	* [r1049] R/textplot.R: Add paramaeters 'col.data', 'col.rows', and
	  'col.columns' to textplot.matrix to allow specification of the
	  color of the matrix data, rows, and columns.
	* [r1048] R/bandplot.R: Add parameters to control line width and
	  line type.

2006-11-14  ggorjan

	* [r1012] trunk/gdata/man/combine.Rd,
	  trunk/gdata/man/frameApply.Rd, trunk/gmodels/R/ci.R,
	  trunk/gmodels/R/fast.prcomp.R, trunk/gmodels/man/ci.Rd,
	  R/bandplot.R, R/boxplot.n.R, R/lowess.R, R/plot.lm.R, R/plotCI.R,
	  R/plotmeans.R, R/residplot.R, R/wapply.R, man/boxplot.n.Rd,
	  man/plotCI.Rd, man/plotmeans.Rd, trunk/gtools/R/combinations.R,
	  trunk/gtools/R/running.R, trunk/gtools/man/ELISA.Rd,
	  trunk/gtools/man/combinations.Rd: Removed executable property

2006-11-14  warnes

	* [r1010] tests/heatmap2Test.Rout.save: Update output file to match
	  (trivial) changes in the test code.
	* [r1008] ChangeLog, NEWS: Update ChangeLog and NEWS files for
	  release 2.3.2.
	* [r1007] DESCRIPTION: Update version number
	* [r1006] DESCRIPTION: Update version number and maintainer
	* [r1005] man/heatmap.2.Rd: Correct problem with labeled
	  correlation matrix example. Thanks to Jean Vidal for reporting
	  the error..

2006-08-02  warnes

	* [r977] trunk/BalloonPlotPaper/BalloonPlot.pdf,
	  trunk/BalloonPlotPaper/BalloonPlot.tex,
	  trunk/MSOfficeUtil/DESCRIPTION,
	  trunk/PathwayModeling/thesispaper/slides.tex,
	  trunk/RMCMC/DESCRIPTION, trunk/RMCMC/man/make.density.Rd,
	  trunk/Rlsf/DESCRIPTION, trunk/Rlsf/man/lsf.numcpu.Rd,
	  trunk/Rlsf/man/lsf.parRapply.Rd, trunk/Rlsf/man/scat.Rd,
	  trunk/bwRF/DESCRIPTION, trunk/bwRF/man/RF.Rd,
	  trunk/exp.ssize/inst/doc/ssize.pdf,
	  trunk/exp.ssize/inst/doc/ssize.tex, trunk/fork/DESCRIPTION,
	  trunk/fork/man/exit.Rd, trunk/fork/man/fork.Rd,
	  trunk/fork/man/getpid.Rd, trunk/fork/man/kill.Rd,
	  trunk/fork/man/signame.Rd, trunk/fork/man/wait.Rd,
	  trunk/gdata/inst/doc/gregmisc.tex,
	  trunk/gdata/man/ConvertMedUnits.Rd,
	  trunk/gdata/man/aggregate.table.Rd, trunk/gdata/man/combine.Rd,
	  trunk/gdata/man/interleave.Rd, trunk/gdata/man/matchcols.Rd,
	  trunk/gdata/man/nobs.Rd, trunk/gdata/man/read.xls.Rd,
	  trunk/gdata/man/rename.vars.Rd, trunk/gdata/man/reorder.Rd,
	  trunk/gdata/man/trim.Rd, trunk/gdata/man/unmatrix.Rd,
	  trunk/gdata/man/upperTriangle.Rd,
	  trunk/gmodels/man/fast.prcomp.Rd,
	  trunk/gmodels/man/fit.contrast.Rd, trunk/gmodels/man/glh.test.Rd,
	  trunk/gmodels/man/make.contrasts.Rd, inst/doc/BalloonPlot.pdf,
	  man/balloonplot.Rd, man/bandplot.Rd, man/boxplot.n.Rd,
	  man/colorpanel.Rd, man/hist2d.Rd, man/ooplot.Rd, man/overplot.Rd,
	  man/plot.lm2.Rd, man/plotCI.Rd, man/plotmeans.Rd,
	  man/residplot.Rd, man/sinkplot.Rd, man/smartlegend.Rd,
	  man/space.Rd, man/textplot.Rd, man/wapply.Rd,
	  trunk/gregmisc/DESCRIPTION,
	  trunk/gregmisc/gregmisc/DESCRIPTION.standalone,
	  trunk/gregmisc/inst/doc/gregmisc.tex,
	  trunk/gtools/man/addLast.Rd, trunk/gtools/man/assert.Rd,
	  trunk/gtools/man/capture.Rd, trunk/gtools/man/combinations.Rd,
	  trunk/gtools/man/defmacro.Rd, trunk/gtools/man/dirichlet.Rd,
	  trunk/gtools/man/foldchange.Rd, trunk/gtools/man/invalid.Rd,
	  trunk/gtools/man/logit.Rd, trunk/gtools/man/mixedsort.Rd,
	  trunk/gtools/man/oddeven.Rd, trunk/gtools/man/permute.Rd,
	  trunk/gtools/man/quantcut.Rd, trunk/gtools/man/running.Rd,
	  trunk/gtools/man/scat.Rd, trunk/gtools/man/setTCPNoDelay.Rd,
	  trunk/nws/DESCRIPTION, trunk/qvalue/DESCRIPTION,
	  trunk/qvalue/man/print.qvalue.Rd, trunk/ssize/DESCRIPTION,
	  trunk/ssize/man/pow.Rd: Update my email address

2006-06-26  nj7w

	* [r967] R/heatmap.2.R: Fixed a bug which displayed warnings when
	  Rowv and Colv were specified as dendrograms

2006-03-10  warnes

	* [r937] tests/heatmap2Test.R: Remove code that added a local path

2006-03-09  nj7w

	* [r935] tests/heatmap2Test.R, tests/heatmap2Test.Rout.save: Added
	  the correct library path where gplots is installed locally and
	  corresponding .save file
	* [r934] tests/heatmap2Test.R: Updated the tests file
	* [r933] R/heatmap.2.R: Removed the condition Colv != Rowv as it
	  has already been taken care of
	* [r932] rtPCR.rda: Deleted rtPCR.rda from the main directory
	* [r931] ChangeLog: Added ChangeLog

2006-03-07  nj7w

	* [r919] DESCRIPTION, NEWS: Updated ChangeLog and NEWS
	* [r918] tests, tests/heatmap2Test.R, tests/heatmap2Test.Rout.save:
	  Added the tests and fixed corrupted files
	* [r917] data/rtPCR.rda: Replaced the corrupted rtPCR.rda file in
	  data directory
	* [r916] tests: Removed the corrputed tests directory
	* [r915] data/rtPCR.rda, rtPCR.rda: Replaced the corrupted
	  rtPCR.rda file in data directory

2006-03-03  nj7w

	* [r914] R/heatmap.2.R, man/heatmap.2.Rd: Updated the code and man
	  page to make sure the Rowv and Colv values are properly handled

2006-03-02  warnes

	* [r908] R/balloonplot.R: Adjust row total placement to adjust for
	  width of the totals
	* [r907] DESCRIPTION, R/balloonplot.R, man/1: Row totals in
	  ballonplot were in reverse order. Fixed.

2006-02-23  nj7w

	* [r899] R/heatmap.2.R, tests/heatmap2Test.R: Add ability to scale
	  the color key using the new 'keysize' argument.
	* [r898] tests, tests/heatmap2Test.R, tests/heatmap2Test.Rout.save:
	  Add tests for heatmap.2
	* [r897] inst/doc/Figure1.eps, inst/doc/Table.eps,
	  inst/doc/bka.bst, inst/doc/heatmap2.R, inst/doc/heatmap2.tex,
	  inst/doc/regression_rank_image.Rda,
	  inst/doc/regression_rank_image_II.Rda: Move heatmap and
	  ballonplot paper source materials to their respective cvs modules
	* [r896] inst/doc/BalloonPlot.R, inst/doc/BalloonPlot.tex,
	  inst/doc/Figure1.pdf, inst/doc/Figure2.pdf, inst/doc/Figure3.pdf,
	  inst/doc/Figure4.pdf, inst/doc/Rnews.sty,
	  inst/doc/SurvivedPop.pdf, inst/doc/SurvivedPopWhite.pdf,
	  inst/doc/SurvivedProp.pdf, inst/doc/TotalPop.pdf: Moved
	  balloonplot paper materials to BallonPlotPaper cvs module
	* [r891] inst/doc/colSeparator.pdf, inst/doc/logData.pdf,
	  inst/doc/logDataColDendrogram.pdf, inst/doc/logDataColOrd.pdf,
	  inst/doc/logDataColOrdNo.pdf, inst/doc/logDataRowDendrogram.pdf,
	  inst/doc/origScale.pdf, inst/doc/rowSeparator.pdf,
	  inst/doc/scaled.pdf: Remove heatmap paper files and move them to
	  the HeatmapPaper cvs module.
	* [r888] inst/doc/colSeparator.pdf, inst/doc/logData.pdf,
	  inst/doc/logDataColDendrogram.pdf, inst/doc/logDataColOrd.pdf,
	  inst/doc/logDataColOrdNo.pdf, inst/doc/logDataRowDendrogram.pdf,
	  inst/doc/origScale.pdf, inst/doc/rowSeparator.pdf,
	  inst/doc/scaled.pdf: Added figures for heatmap2 paper
	* [r887] inst/doc/regression_rank_image.Rda,
	  inst/doc/regression_rank_image_II.Rda: Added the .Rda files for
	  the heatmap2 paper
	* [r886] inst/doc/heatmap2.tex: Added the source - (tex file) of
	  the heatmap paper
	* [r885] inst/doc/heatmap2.R: Added the code for the figures of
	  heatmap paper

2006-02-21  nj7w

	* [r884] R/heatmap.2.R, man/heatmap.2.Rd: Minor updates to
	  heatmap.2 - fixed Rowv, Colv and dendrogram behaviour. Now
	  Rowv=NULL or FALSE both imply no dendrogram computation.

2006-01-12  warnes

	* [r844] inst/doc/BalloonPlot.R, inst/doc/BalloonPlot.pdf,
	  inst/doc/BalloonPlot.tex, inst/doc/Figure1.pdf,
	  inst/doc/Figure2.pdf, inst/doc/Figure3.pdf, inst/doc/Figure4.pdf:
	  more updates
	* [r843] inst/doc/bka.bst: Add Biometrica bibliography style file
	* [r842] inst/doc/BalloonPlot.tex: A little more.
	* [r841] inst/doc/BalloonPlot.tex: Updates to respond to referee.

2006-01-12  nj7w

	* [r840] inst/doc/BalloonPlot.tex: Added references

2005-12-13  nj7w

	* [r811] inst/doc/BalloonPlot.tex: Fixed Nitin's company name
	* [r809] ChangeLog, NEWS, trunk/gtools/NEWS: Updated NEWS and
	  removed ChangeLog

2005-12-12  nj7w

	* [r802] R/plotmeans.R: Fixed bug in plotmeans - based on Stefano
	  Calza's suggestion

2005-12-07  nj7w

	* [r787] DESCRIPTION: Updated version number
	* [r786] NAMESPACE, R/plot.lm.R, man/plot.lm2.Rd: Added plot.lm
	* [r785] man/barplot2.Rd: Changed the default grey colors to heat
	  colors, if height is matrix
	* [r784] R/barplot2.R: Changed the default greay colors to heat
	  colors, if height is matrix

2005-12-06  nj7w

	* [r783] man/barplot2.Rd: Fixed minor error in documentation of
	  barplot2

2005-12-02  warnes

	* [r777] R/plot.lm.R: Remove .Alias calls, since .Alias is defunct.

2005-12-01  nj7w

	* [r776] trunk/gmodels/man/ci.Rd, trunk/gmodels/man/coefFrame.Rd,
	  trunk/gmodels/man/estimable.Rd,
	  trunk/gmodels/man/fit.contrast.Rd,
	  trunk/gmodels/man/make.contrasts.Rd, man/balloonplot.Rd,
	  man/bandplot.Rd, man/boxplot.n.Rd, man/colorpanel.Rd,
	  man/overplot.Rd, man/plotmeans.Rd, man/textplot.Rd,
	  man/wapply.Rd, trunk/gtools/man/combinations.Rd,
	  trunk/gtools/man/foldchange.Rd, trunk/gtools/man/invalid.Rd,
	  trunk/gtools/man/logit.Rd, trunk/gtools/man/mixedsort.Rd,
	  trunk/gtools/man/oddeven.Rd, trunk/gtools/man/quantcut.Rd,
	  trunk/gtools/man/running.Rd: Updated Greg's email address

2005-11-23  nj7w

	* [r764] inst/doc/BalloonPlot.R, inst/doc/BalloonPlot.pdf,
	  inst/doc/BalloonPlot.tex, inst/doc/Figure2.pdf: Updated Figure 2
	  colors

2005-11-18  warnes

	* [r743] inst/doc/BalloonPlot.pdf, inst/doc/Figure1.pdf,
	  inst/doc/Figure2.pdf, inst/doc/Figure3.pdf, inst/doc/Figure4.pdf:
	  Latest version of the pdf files
	* [r742] inst/doc/BalloonPlot.tex: Nitin works for the Cambrige
	  Group, not Pfizer.
	* [r741] inst/doc/BalloonPlot.tex: Minor text rewording.
	* [r740] inst/doc/BalloonPlot.R, inst/doc/BalloonPlot.tex: More
	  edits.
	* [r739] R/balloonplot.R: Recent changes to align row totals with
	  the overall total broke how the marginal cumulative fractions
	  were displayed. This patch fixes the problem.
	* [r737] DESCRIPTION, R/balloonplot.R, R/plot.lm.R,
	  inst/doc/BalloonPlot.pdf, man/balloonplot.Rd: - Update
	  documentation for balloonplot to match the latest code. - Correct
	  spelling of 'show.zeroes' to 'show.zeros'
	* [r736] R/colorpanel.R: More changes: colorpanel now allows only 2
	  colors to be specified if no 'middle' color is desired.

2005-11-17  warnes

	* [r735] R/balloonplot.R: Allow user to control removal of
	  duplicate entries in balloonplot.
	* [r734] R/colorpanel.R, man/colorpanel.Rd: Extend colorpanel to
	  handle just two-colors in addition to three.

2005-11-09  nj7w

	* [r733] inst/doc/BalloonPlot.pdf: Updated the pdf file
	* [r732] inst/doc/BalloonPlot.R, inst/doc/BalloonPlot.tex: Updated
	  the changes
	* [r731] inst/doc/Figure4.pdf: Modified figure 4
	* [r730] inst/doc/BalloonPlot.R: Updated code
	* [r729] inst/doc/Figure3.pdf: Modified figure 3
	* [r728] inst/doc/Figure2.pdf: Modified figure 2
	* [r727] inst/doc/Figure1.pdf: Modified figure 1

2005-11-08  nj7w

	* [r726] man/plotCI.Rd: Updated Greg's email

2005-11-07  nj7w

	* [r725] inst/doc/BalloonPlot.pdf, inst/doc/BalloonPlot.tex: Minor
	  modifications to fit the code properly on pdf

2005-11-07  warnes

	* [r724] inst/doc/BalloonPlot.R: Add R code that generates plots
	* [r723] inst/doc/Figure2.pdf, inst/doc/Figure3.pdf,
	  inst/doc/Figure4.pdf: Add figures to CVS
	* [r722] inst/doc/BalloonPlot.pdf, inst/doc/BalloonPlot.tex,
	  inst/doc/Figure1.pdf: Text changes

2005-11-04  warnes

	* [r721] R/balloonplot.R: Fix some alignment issues.
	* [r720] inst/doc/BalloonPlot.pdf, inst/doc/Table.pdf: Remove
	  Table.pdf since it is no longer needed
	* [r719] inst/doc/BalloonPlot.pdf, inst/doc/BalloonPlot.tex,
	  inst/doc/Figure1.pdf: Nitin's Changes
	* [r718] inst/doc/SurvivedPop.pdf, inst/doc/SurvivedPopWhite.pdf,
	  inst/doc/SurvivedProp.pdf, inst/doc/TotalPop.pdf: Add figure
	  plots
	* [r717] inst/doc/BalloonPlot.pdf, inst/doc/BalloonPlot.tex: Fix
	  paths

2005-10-20  nj7w

	* [r705] inst/doc/Figure1.eps, inst/doc/Table.eps: added the eps
	  version of figures
	* [r704] inst/doc/BalloonPlot.pdf: Updated BallonPlot.pdf
	* [r703] inst/doc/SurvivedPop.pdf, inst/doc/SurvivedPopWhite.pdf,
	  inst/doc/SurvivedProp.pdf, inst/doc/TotalPop.pdf: Removed Old
	  Figure
	* [r702] inst/doc/Figure1.pdf, inst/doc/Table.pdf: Added the new
	  figure - for total popluation - Balloonplot
	* [r701] inst/doc/BalloonPlot.tex: Modified the BallonPlot article
	* [r700] inst/doc/BalloonPlot.tex: Added references

2005-10-19  arnima

	* [r697] man/rich.color.Rd: The last example now displays the
	  correct heat.colors. Default 'palette' argument is now a single
	  string, not a vector.
	* [r696] R/rich.color.R: Default 'palette' argument is now a single
	  string, not a vector.

2005-10-14  warnes

	* [r694] DESCRIPTION, R/balloonplot.R, man/balloonplot.Rd:
	  Formatting fixes: - Handle multiple row or column category
	  variables - Separate rows/columns of category labels by lines -
	  Fix handling of 'cumsum' plots on row/column labels - Improve
	  display of row/column sums

2005-10-13  warnes

	* [r693] man/balloonplot.Rd: Add example using Titanic data that
	  exercises the multi-factor display.

2005-10-11  warnes

	* [r692] R/balloonplot.R: Initial changes to allow multiple x and y
	  factor variables. Yet to be done: 1) remove extra 'boxes'. 2)
	  omit duplicated values

2005-10-04  warnes

	* [r691] inst/doc/BalloonPlot.pdf, inst/doc/BalloonPlot.tex: more
	  minor fixes
	* [r690] inst/doc/BalloonPlot.pdf, inst/doc/BalloonPlot.tex: fix
	  spacing
	* [r689] inst/doc/Rnews.sty: Inlcude Rnews.sty
	* [r688] inst/doc/BalloonPlot.pdf, inst/doc/BalloonPlot.tex: Some
	  textual edits.

2005-10-03  nj7w

	* [r687] inst/doc/SurvivedPop.pdf, inst/doc/SurvivedPopWhite.pdf,
	  inst/doc/SurvivedProp.pdf, inst/doc/TotalPop.pdf: Added figures
	  for the R-News Article

2005-09-29  nj7w

	* [r680] inst/doc/BalloonPlot.pdf, inst/doc/BalloonPlot.tex:
	  Updated the documentation - added the name of the person who
	  asked the question
	* [r679] inst, inst/doc, inst/doc/BalloonPlot.pdf,
	  inst/doc/BalloonPlot.tex: Added R-news article

2005-09-12  nj7w

	* [r671] trunk/gdata/man/aggregate.table.Rd,
	  trunk/gdata/man/interleave.Rd, trunk/gdata/man/matchcols.Rd,
	  trunk/gdata/man/nobs.Rd, trunk/gdata/man/read.xls.Rd,
	  trunk/gdata/man/rename.vars.Rd, trunk/gdata/man/trim.Rd,
	  trunk/gdata/man/unmatrix.Rd, trunk/gmodels/man/fast.prcomp.Rd,
	  trunk/gmodels/man/glh.test.Rd, man/hist2d.Rd, man/ooplot.Rd,
	  man/residplot.Rd, man/sinkplot.Rd, man/smartlegend.Rd,
	  man/space.Rd, trunk/gtools/man/assert.Rd,
	  trunk/gtools/man/dirichlet.Rd, trunk/gtools/man/permute.Rd,
	  trunk/gtools/man/scat.Rd: Updated Greg's email
	* [r670] R/balloonplot.R: Updated version of balloonplot - by
	  Romain Francois <francoisromain@free.fr>

2005-09-09  nj7w

	* [r669] ChangeLog, DESCRIPTION: Updated the version and ChangeLog
	* [r668] R/balloonplot.R, man/balloonplot.Rd: Changes in ballon
	  plot based on Romain Francois (francoisromain@free.fr)
	  suggestions

2005-09-06  nj7w

	* [r666] DESCRIPTION: Updated package dependencies
	* [r665] NEWS: Added NEWS

2005-09-02  nj7w

	* [r655] trunk/gmodels/ChangeLog, ChangeLog: Added ChangeLog

2005-08-31  nj7w

	* [r644] trunk/gdata/DESCRIPTION, trunk/gmodels/DESCRIPTION,
	  DESCRIPTION: Added DESCRIPTION file
	* [r643] trunk/gdata/DESCRIPTION.in, trunk/gmodels/DESCRIPTION.in,
	  DESCRIPTION.in: removed DESCRIPTION.in

2005-06-09  nj7w

	* [r625] trunk/gdata/R/Args.R, trunk/gdata/R/aggregate.table.R,
	  trunk/gdata/R/combine.R, trunk/gdata/R/elem.R,
	  trunk/gdata/R/env.R, trunk/gdata/R/frameApply.R,
	  trunk/gdata/R/interleave.R, trunk/gdata/R/is.what.R,
	  trunk/gdata/R/keep.R, trunk/gdata/R/ll.R,
	  trunk/gdata/R/matchcols.R, trunk/gdata/R/nobs.R,
	  trunk/gdata/R/read.xls.R, trunk/gdata/R/rename.vars.R,
	  trunk/gdata/R/reorder.R, trunk/gdata/R/trim.R,
	  trunk/gdata/R/unmatrix.R, trunk/gdata/inst/perl/IO/AtomicFile.pm,
	  trunk/gdata/inst/perl/IO/InnerFile.pm,
	  trunk/gdata/inst/perl/IO/Lines.pm,
	  trunk/gdata/inst/perl/IO/Scalar.pm,
	  trunk/gdata/inst/perl/IO/Scalar.pm.html,
	  trunk/gdata/inst/perl/IO/ScalarArray.pm,
	  trunk/gdata/inst/perl/IO/Stringy.pm,
	  trunk/gdata/inst/perl/IO/Wrap.pm,
	  trunk/gdata/inst/perl/IO/WrapTie.pm,
	  trunk/gdata/man/aggregate.table.Rd, trunk/gdata/man/combine.Rd,
	  trunk/gdata/man/drop.levels.Rd, trunk/gdata/man/interleave.Rd,
	  trunk/gdata/man/nobs.Rd, trunk/gdata/man/rename.vars.Rd,
	  trunk/gdata/man/reorder.Rd, trunk/gmodels/R/ci.R,
	  trunk/gmodels/R/coefFrame.R, trunk/gmodels/R/estimable.R,
	  trunk/gmodels/R/fast.prcomp.R, trunk/gmodels/R/fit.contrast.R,
	  trunk/gmodels/R/glh.test.R, trunk/gmodels/R/make.contrasts.R,
	  trunk/gmodels/man/CrossTable.Rd, trunk/gmodels/man/ci.Rd,
	  trunk/gmodels/man/coefFrame.Rd, trunk/gmodels/man/estimable.Rd,
	  trunk/gmodels/man/fast.prcomp.Rd,
	  trunk/gmodels/man/fit.contrast.Rd, trunk/gmodels/man/glh.test.Rd,
	  trunk/gmodels/man/make.contrasts.Rd, R/balloonplot.R,
	  R/bandplot.R, R/boxplot.n.R, R/colorpanel.R, R/heatmap.2.R,
	  R/hist2d.R, R/lowess.R, R/ooplot.R, R/overplot.R, R/plotCI.R,
	  R/plotmeans.R, R/qqnorm.aov.R, R/residplot.R, R/rich.color.R,
	  R/sinkplot.R, R/smartlegend.R, R/space.R, R/textplot.R,
	  R/wapply.R, man/1, man/bandplot.Rd, man/barplot2.Rd,
	  man/boxplot.n.Rd, man/hist2d.Rd, man/lowess.Rd, man/plotCI.Rd,
	  man/plotmeans.Rd, man/residplot.Rd, man/space.Rd, man/wapply.Rd,
	  trunk/gtools/R/RSCompat.S, trunk/gtools/R/combinations.R,
	  trunk/gtools/R/dirichlet.R, trunk/gtools/R/foldchange.R,
	  trunk/gtools/R/invalid.R, trunk/gtools/R/logit.R,
	  trunk/gtools/R/mixedsort.R, trunk/gtools/R/oddeven.R,
	  trunk/gtools/R/permute.R, trunk/gtools/R/quantcut.R,
	  trunk/gtools/R/running.R, trunk/gtools/R/scat.R,
	  trunk/gtools/man/ELISA.Rd, trunk/gtools/man/combinations.Rd,
	  trunk/gtools/man/dirichlet.Rd, trunk/gtools/man/foldchange.Rd,
	  trunk/gtools/man/invalid.Rd, trunk/gtools/man/logit.Rd,
	  trunk/gtools/man/mixedsort.Rd, trunk/gtools/man/oddeven.Rd,
	  trunk/gtools/man/permute.Rd, trunk/gtools/man/quantcut.Rd,
	  trunk/gtools/man/running.Rd, trunk/gtools/man/scat.Rd: Updating
	  the version number, and various help files to synchronize
	  splitting of gregmisc bundle in 4 individual components.
	* [r624] R/barplot2.R: Changes based on Marc Schwartz's suggestions
	  to handel 0's and NA's appropriately.

2005-05-13  nj7w

	* [r621] trunk/gdata/R/read.xls.R, trunk/gmodels/man/CrossTable.Rd,
	  man/heatmap.2.Rd: 1) Using dQuote.ascii function in read.xls as
	  the new version of dQuote doesn't work proprly with UTF-8 locale.
	  2) Modified CrossTable.Rd usage in gmodels 3) Modified heatmap.2
	  usage in gplots.

2005-04-04  warnes

	* [r603] R/overplot.R: Explicitly reference package containing
	  lowess.formula in panel.overplot(). This should fix the error
	  reported by Troels Ring <tring@gvdnet.dk>.

2005-02-26  nj7w

	* [r565] trunk/gdata/NAMESPACE, trunk/gdata/man/elem.Rd,
	  trunk/gdata/man/env.Rd, trunk/gdata/man/ll.Rd,
	  trunk/gdata/man/read.xls.Rd, R/heatmap.2.R, man/heatmap.2.Rd,
	  man/rich.color.Rd, man/sinkplot.Rd, man/textplot.Rd: *** empty
	  log message ***

2005-02-25  warnes

	* [r563] trunk/gdata/R/elem.R, trunk/gdata/R/env.R,
	  trunk/gdata/R/ll.R, trunk/gdata/man/Args.Rd,
	  trunk/gdata/man/env.Rd, trunk/gdata/man/ll.Rd, man/rich.color.Rd:
	  Integrate changes submitted by Arni Magnusson
	* [r559] NAMESPACE: Add dependency imports from 'stats' package.

2005-02-22  warnes

	* [r555] R/bandplot.R: Fix problem in passing graphical parameters
	  (xlim,etc).@

2005-02-08  warnes

	* [r541] DESCRIPTION.in: Improve package title.
	* [r540] R/heatmap.2.R: Ignore missing values when computing
	  symmetric range.

2005-02-02  warnes

	* [r530] man/plotmeans.Rd: Add more extensive example.

2005-01-14  warnes

	* [r516] R/textplot.R: Code can be simplified because R now
	  supports selecting a fixed width font.

2005-01-12  warnes

	* [r515] trunk/gdata/DESCRIPTION.in, trunk/gmodels/DESCRIPTION.in,
	  DESCRIPTION.in, trunk/gtools/DESCRIPTION.in: Add dependency on R
	  1.9.0+ to prevent poeple from installing on old versions of R
	  which don't support namespaces.

2004-11-30  warnes

	* [r495] R/heatmap.2.R, man/heatmap.2.Rd: 1. Add new parameters for
	  controlling color key: - If `symkey==TRUE', the color key will be
	  made symmetric about 0. - The `densadj' parameter can be used to
	  modify the smoother width (see the `adjust' parameter under
	  `help(density)') for the density plotted in the key.
	  
	  2. Fix handling of rowsep/colsep.
	  
	  3. Vector of length 2 giving the width (colsep) or height
	  (rowsep) the separator box drawn by colsep and rowsep as a
	  function of the width (colsep) or height (rowsep) of a cell.
	  
	  4. Appropriate changes to the corresponding help page, plus some
	  minor formatting changes.

2004-11-03  warnes

	* [r474] R/heatmap.2.R: Fix bugs in layout of cell notes. They were
	  being plotted top down rather than bottom up. Further reordering
	  of the x matrix didn't also reorder the notes. Both issues should
	  now be resolved.

2004-09-27  warneg

	* [r461] trunk/gdata/DESCRIPTION, trunk/gdata/DESCRIPTION.in,
	  trunk/gdata/NAMESPACE, trunk/gdata/man/.Rhistory,
	  trunk/gmodels/DESCRIPTION, trunk/gmodels/DESCRIPTION.in,
	  DESCRIPTION, DESCRIPTION.in, man/sinkplot.Rd, man/textplot.Rd,
	  trunk/gregmisc/.Rhistory, trunk/gregmisc/DESCRIPTION,
	  trunk/gtools/DESCRIPTION, trunk/gtools/DESCRIPTION.in,
	  trunk/gtools/man/running.Rd: Updated to pass R CMD check.

2004-09-03  warneg

	* [r453] man/textplot.Rd: Provide explicit package for call to
	  nobs.
	* [r452] man/heatmap.2.Rd: Fix typos.
	* [r446] trunk/gdata/DESCRIPTION, trunk/gdata/DESCRIPTION.in,
	  trunk/gdata/NAMESPACE, trunk/gdata/R/Args.R,
	  trunk/gdata/R/aggregate.table.R, trunk/gdata/R/combine.R,
	  trunk/gdata/R/elem.R, trunk/gdata/R/env.R,
	  trunk/gdata/R/interleave.R, trunk/gdata/R/is.what.R,
	  trunk/gdata/R/keep.R, trunk/gdata/R/ll.R,
	  trunk/gdata/R/matchcols.R, trunk/gdata/R/nobs.R,
	  trunk/gdata/R/read.xls.R, trunk/gdata/R/rename.vars.R,
	  trunk/gdata/R/reorder.R, trunk/gdata/R/trim.R,
	  trunk/gdata/man/reorder.Rd, trunk/gmodels/DESCRIPTION,
	  trunk/gmodels/NAMESPACE, trunk/gmodels/R/CrossTable.R,
	  trunk/gmodels/R/ci.R, trunk/gmodels/R/estimable.R,
	  trunk/gmodels/R/fast.prcomp.R, trunk/gmodels/R/fit.contrast.R,
	  trunk/gmodels/R/glh.test.R, trunk/gmodels/R/make.contrasts.R,
	  trunk/gmodels/man/estimable.Rd,
	  trunk/gmodels/man/fit.contrast.Rd, trunk/gmodels/man/glh.test.Rd,
	  trunk/gmodels/man/make.contrasts.Rd, DESCRIPTION, NAMESPACE,
	  R/balloonplot.R, R/bandplot.R, R/barplot2.R, R/boxplot.n.R,
	  R/colorpanel.R, R/heatmap.2.R, R/hist2d.R, R/lowess.R,
	  R/ooplot.R, R/overplot.R, R/plotCI.R, R/plotmeans.R,
	  R/qqnorm.aov.R, R/residplot.R, R/rich.color.R, R/sinkplot.R,
	  R/smartlegend.R, R/space.R, R/textplot.R, R/wapply.R,
	  trunk/gtools/DESCRIPTION, trunk/gtools/NAMESPACE,
	  trunk/gtools/R/dirichlet.R, trunk/gtools/R/foldchange.R,
	  trunk/gtools/R/invalid.R, trunk/gtools/R/mixedsort.R,
	  trunk/gtools/R/oddeven.R, trunk/gtools/R/permute.R,
	  trunk/gtools/R/quantcut.R, trunk/gtools/R/running.R,
	  trunk/gtools/man/running.Rd: initial bundle checkin

2004-09-02  warneg

	* [r442] trunk/gdata/DESCRIPTION, trunk/gdata/DESCRIPTION.in,
	  trunk/gdata/NAMESPACE, trunk/gdata/man/.Rhistory,
	  trunk/gmodels/DESCRIPTION, trunk/gmodels/DESCRIPTION.in,
	  trunk/gmodels/NAMESPACE, DESCRIPTION, DESCRIPTION.in, NAMESPACE,
	  man/1, man/residplot.Rd, trunk/gregmisc/.Rhistory,
	  trunk/gtools/DESCRIPTION, trunk/gtools/DESCRIPTION.in,
	  trunk/gtools/NAMESPACE: Initial revision

2004-07-29  warnes

	* [r426] R/plotCI.R, man/plotCI.Rd: Integrate changes from the
	  version of plotCI maintained by Martin Maechler.

2004-06-30  warnes

	* [r393] R/textplot.R: Remove commented-out code.
	* [r392] R/textplot.R: Fixed text size calculations

2004-06-28  warnes

	* [r391] R/barplot2.R, man/barplot2.Rd: - Default 2-d color set to
	  grey as in (v2.0.0) r-devel - The default (v1.9.1) barplot method
	  now handles vectors and 1-d arrays (e.g., obtained by table())
	  the same, and uses grey instead of heat color palettes in these
	  cases. (Also fixes PR#6776.) - Updated to reflect the addition of
	  'offset' argument in base - Fix bug in stacked barplots, which
	  would not be plotted properly

2004-06-24  warnes

	* [r385] R/heatmap.2.R, man/heatmap.2.Rd: Add ability to specify
	  color of NA cells.

2004-05-27  warnes

	* [r349] man/plotCI.Rd: Fix spelling error.

2004-05-26  warnes

	* [r347] R/overplot.R: One more fix to get it right.
	* [r346] R/overplot.R: Use triple-colon operator ':::' to access
	  plot.formula from the graphics package.
	* [r344] man/rich.color.Rd: Replace 'F' by 'FALSE' to pass R CMD
	  check.

2004-05-25  warnes

	* [r338] R/overplot.R: Work around bug in R 1.9.X due to
	  plot.formula() not having the same arguments as plot().
	* [r336] R/rich.color.R, man/rich.color.Rd: Add rich.colors()
	  submitted by Arni Magnusson <arnima@u.washington.edu>.
	* [r328] R/ooplot.R, man/ooplot.Rd: ??

2004-05-24  warnes

	* [r324] R/plotCI.R, R/plotmeans.R: Modified to use invalid() to
	  check arguments instead of missing(). This fixes some build
	  errors under R-1.9.0-Patched.

2004-04-22  warnes

	* [r319] R/ooplot.R, man/ooplot.Rd: Integrate changes from Lodewijk
	  Bonebakker <bonebakker@comcast.net>

2004-04-13  warnes

	* [r318] R/space.R, man/space.Rd: Add ability to space points along
	  'y' direction.

2004-04-02  warnes

	* [r313] R/smartlegend.R: Fixed smartlegend() positioning when x
	  and/or y axis are log-scale.

2004-03-30  warnes

	* [r311] R/textplot.R, trunk/gregmisc/DESCRIPTION: - Fix bug in
	  textplot() reported by Wright, Kevin
	  <kevin.d.wright@pioneer.com>.

2004-03-26  warnes

	* [r305] man/textplot.Rd: Update to match changes in textplot()
	  code.
	* [r304] man/ooplot.Rd: Remove Windows EOL characters.
	* [r302] man/barplot2.Rd: - Remove some commented-out code. -
	  Remove cvs log tag.
	* [r300] R/textplot.R: Misc changes.

2004-02-17  warnes

	* [r290] man/ooplot.Rd: Minor fix to ooplot documentation.
	* [r289] R/ooplot.R, man/ooplot.Rd: Integrate ooplot updates
	  provided by Lodewijk Bonebakker <bonebakker@comcast.net>

2004-02-02  warnes

	* [r287] R/colorpanel.R, man/colorpanel.Rd: - Add colorpanel
	  function, which generates a smoothly varying band of colors over
	  a three color range (lo, mid, high).

2004-01-21  warnes

	* [r283] man/textplot.Rd: - Correct arguments to halign to match
	  code.
	* [r281] R/lowess.R: Track R 1.9.0's move of 'lowess' from the base
	  package to the (new) stats package.
	* [r279] man/sinkplot.Rd: - Fix sinkplot() example by replacing 'T'
	  with 'TRUE'.
	* [r278] man/ooplot.Rd: - Add some more details to the ooplot()
	  documentation. The documentation is *not* complete.
	* [r277] R/textplot.R, trunk/gtools/R/capture.R: - Mark sprint() as
	  depreciated. - Replace references to sprint with capture.output()
	  - Use match.arg for halign and valign arguments to
	  textplot.default. - Fix textplot.character so that a vector of
	  characters is properly displayed. Previouslt, character vectors
	  were plotted on top of each other.

2004-01-19  warnes

	* [r276] R/sinkplot.R, man/sinkplot.Rd: New function sinkplot(), as
	  requested on R-devel by Kevin Wright <kwright@eskimo.com> in
	  https://www.stat.math.ethz.ch/pipermail/r-devel/2004-January/028483.html.

2004-01-15  warnes

	* [r274] R/ooplot.R, man/ooplot.Rd: Add initial code and docs for
	  ooplot() function submitted by Lodewijk Bonebakker
	  <bonebakker@comcast.net>.

2003-12-03  warnes

	* [r253] trunk/gdata/man/elem.Rd, trunk/gdata/man/ll.Rd,
	  man/lowess.Rd, man/textplot.Rd, man/wapply.Rd,
	  trunk/gtools/man/foldchange.Rd: - match function argument
	  defaults with 'usage'
	* [r252] R/heatmap.2.R, man/heatmap.2.Rd: - Fix buglets in heatmap
	  function - Make a slight enhancement to the example code.

2003-12-02  warnes

	* [r251] R/heatmap.2.R: Integrated some suggestions from Sean Davis
	  <sdavis2@mail.nih.gov>.
	* [r250] man/heatmap.2.Rd: - Make final example use 16 colors
	  instead of 8. This looks nicer.
	* [r248] man/barplot2.Rd: - Remove '%' character from example code
	  to avoid errors.
	* [r247] R/plotCI.R: - Add '...' parameter to call to text to allow
	  user to control size/color/etc.

2003-12-01  warnes

	* [r246] man/barplot2.Rd: - updated to match changes to barplot()
	  in base.
	* [r245] data, data/rtPCR.rda: - Renamed rtPCR.Rda to rtPCR.rda so
	  that R will properly load the file when data(rtPCR) is executed.
	* [r243] R/barplot2.R: - Follow patches applied to barplot() in
	  base.

2003-11-24  warnes

	* [r242] man/heatmap.2.Rd: Fix unbalanced braces.
	* [r240] R/overplot.R, man/overplot.Rd: Fix errors reported by R
	  CMD check.

2003-11-21  warnes

	* [r239] man/overplot.Rd: Added missing closing brace.
	* [r238] man/rtPCR.Rd: Initial addition of these files. Used in
	  examples of overplot().
	* [r236] R/heatmap.2.R, man/heatmap.2.Rd: Applied my enhancements
	  to the heatmap() code from R 1.8.0, and added documentation of
	  these changes.
	* [r235] R/overplot.R, man/overplot.Rd: - Discovered that axis(N)
	  does the right thing without needing to be given location for
	  tick marks. This allowed simplification of the code.
	  
	  - Minor other changes for distribution
	  
	  - Addition of overplot.Rd documentation.
	* [r231] R/heatmap.2.R, man/heatmap.2.Rd: - Integrated my
	  extensions into the R 1.8.0 version of heatmap. - Add Rd
	  documentation.

2003-11-19  warnes

	* [r228] man/bandplot.Rd: Remove extranious NULL that confused R
	  CMD check.

2003-11-18  warnes

	* [r226] man/barplot2.Rd: - Tiny fix to remove R CMD check error.
	* [r225] man/smartlegend.Rd: - Added missing closing brace.
	* [r224] trunk/gdata/R/elem.R, trunk/gdata/R/env.R,
	  trunk/gdata/R/is.what.R, trunk/gdata/R/keep.R,
	  trunk/gdata/R/ll.R, R/overplot.R: - Convert from MS-Dos to Unix
	  line endings. - Reformat to 80 columns.

2003-11-10  warnes

	* [r220] trunk/gdata/R/elem.R, trunk/gdata/R/env.R,
	  trunk/gdata/R/is.what.R, trunk/gdata/R/keep.R,
	  trunk/gdata/R/ll.R, trunk/gdata/man/elem.Rd,
	  trunk/gdata/man/env.Rd, trunk/gdata/man/is.what.Rd,
	  trunk/gdata/man/keep.Rd, trunk/gdata/man/ll.Rd, R/heatmap.2.R,
	  R/overplot.R, R/plotmeans.R, R/space.R, R/wapply.R,
	  trunk/gregmisc/DESCRIPTION, trunk/gtools/R/capture.R,
	  trunk/gtools/man/capture.Rd: - Add files contributed by Arni
	  Magnusson <arnima@u.washington.edu>. As well as some of my own.

2003-08-19  warnes

	* [r219] R/heatmap.2.R: - Copy of local changes.
	* [r218] R/heatmap.2.R: - Checkin before re-integrating local
	  changes.

2003-06-19  warnes

	* [r201] R/heatmap.2.R: - Added enhanced heatmap function.

2003-06-09  warnes

	* [r200] man/smartlegend.Rd: - Add help text for smartlegend.
	* [r199] R/smartlegend.R: - New function smartlegend().

2003-04-22  warnes

	* [r191] R/plotmeans.R: - Fixeed warning messing caused when
	  'connect' is a vector.
	* [r187] R/barplot2.R: Update from Marc Schwartz, modified by
	  Gregory Warnes:
	  
	  - Modified dim() checks for 'ci.l' and 'ci.u' against 'height' to
	  remove R v1.7.0 if() based error msgs for vector conditions.

2003-04-04  warnes

	* [r182] R/balloonplot.R, man/qqnorm.aov.Rd,
	  trunk/gtools/R/dirichlet.R: - Change occurences of 'T' to 'TRUE'
	* [r179] man/textplot.Rd: - Updated to match changes in textplot
	  function: - Added textplot.character - Renamed arguments
	  "col.margin" and "row.margin" to "cmar", and "rmar" so that
	  specifying "col='red'" is possible. - Fixed R CMD check errors -
	  Improve comments in example - Add textplot.matrix example
	* [r178] R/textplot.R: - Added textplot.character to handle
	  character strings. - Moved test for vector and matrix arguments
	  to textplot.default. - Renamed arguments "col.margin" and
	  "row.margin" to "cmar", and "rmar" so that specifying "col='red'"
	  is possible.

2003-04-02  warnes

	* [r175] R/textplot.R, man/textplot.Rd: - Added textplot function
	  and friends, as well as documentation.

2003-03-08  warnes

	* [r171] man/balloonplot.Rd: - Forgot to update arglist in \usage
	  section.
	* [r169] R/balloonplot.R, man/balloonplot.Rd: - Added parameters
	  for rotation of and amount of space allocated for the row and
	  column labels.

2003-03-07  warnes

	* [r168] trunk/gmodels/R/fast.prcomp.R, R/hist2d.R, R/qqnorm.aov.R,
	  trunk/gregmisc/DESCRIPTION, trunk/gtools/R/RSCompat.S: - Minor
	  changes to code to allow the package to be provided as an S-Plus
	  chapter.
	* [r167] R/lowess.R: - Add 'NULL' as the last element of if
	  statement that defines lowess.default so that when the file is
	  sourced, S-Plus doesn't display the function definition.
	* [r166] R/lowess.R: - Specify where the defualt lowess function
	  should be found. - Use getFunction in S-Plus instead of 'get'

2003-01-30  warnes

	* [r159] R/barplot2.R, man/barplot2.Rd: - Added argument 'add' to
	  allow for the addition of a barplot to an existing graphic.
	  Default is FALSE

2003-01-20  warnes

	* [r156] R/balloonplot.R, man/balloonplot.Rd: - Updated balloonplot
	  help page.
	* [r155] R/wapply.R, man/wapply.Rd: - Updated wapply.R to allow
	  specification of evaluation points when method is 'width' or
	  'range' using the 'pts' argument. - Updated wapply.Rd to add
	  'pts' argument - Fixed typos, spelling errors, gramatical errors
	  and lack of clarity in wapply.Rd help text.

2003-01-03  warnes

	* [r154] R/balloonplot.R, man/balloonplot.Rd: - Initial checkin of
	  balloonplot functions and documentation.
	* [r153] man/space.Rd: - Added reference to and comparison example
	  of sunflowerplot. - Added code to put example plots on same plot
	  window using par(mfrow=...).

2003-01-02  warnes

	* [r150] R/barplot2.R: - Changed assignment statements that used
	  "=" to "<-" to avoid syntax errors in older versions of the S
	  language.
	* [r149] R/lowess.R: - Added wrapper code so that R-specific
	  fiddling won't be executed under S-Plus.
	* [r147] R/qqnorm.aov.R, man/qqnorm.aov.Rd: - Renamed first
	  parameter to match qqnorm generic.
	* [r146] man/qqnorm.aov.Rd: Added additional help text from Kjeitl.

2002-12-31  warnes

	* [r145] R/qqnorm.aov.R, man/qqnorm.aov.Rd: Initial checkin of
	  qqnorm.aov function and documentation submitted by Kjetil
	  Halvorsen <kjetilh@jupiter.umsanet.edu.bo>.

2002-11-04  warnes

	* [r143] R/barplot2.R, man/barplot2.Rd: Updates from Marc Schwartz:
	  
	  - Updated underlying code to be based upon the new barplot() in R
	  v1.6.1 - This now uses the 'axis.lty' and 'border' arguments - In
	  R v1.6.0, R Core introduced a new function called axTicks(). This
	  is an R equivalent of the C code for CreateAtVector in plot.c.
	  This now enables me to get the axis tick mark positions
	  consistently when the 'height' related axis is either linear or
	  log. Thus, I can now have consistent tick marks and can plot grid
	  lines in either situation. If 'plot.grid = TRUE' and 'grid.inc'
	  is specified, then I still use pretty() to determine the tick
	  marks and lines. - This code now depends on R 1.6.0 or later.

2002-10-30  warnes

	* [r139] R/plot.lm.R: - Commented out plot.lm() code since recent
	  changes in R have broken it.

2002-10-11  warnes

	* [r131] R/barplot2.R: - Fixed log scale errors in legend() call

2002-10-01  warnes

	* [r130] man/hist2d.Rd: - Added examples of using 'contour' and
	  'filled.contour' for display.

2002-09-24  warnes

	* [r121] R/plotmeans.R: - Changed digits=options("digits") which
	  produces a list of length 1 to digits=getOption("digits") which
	  returns a vector of length one. The former was causing an error
	  when passed to round().

2002-09-23  warnes

	* [r119] trunk/gmodels/man/CrossTable.Rd,
	  trunk/gmodels/man/glh.test.Rd, man/barplot2.Rd: - Fixed syntax
	  errors in barplot2.Rd and CrossTable.Rd - Fixed incorrect
	  translation of 'F' (distribution) to 'FALSE' in glh.test.Rd
	* [r117] trunk/gdata/R/aggregate.table.R, trunk/gdata/R/combine.R,
	  trunk/gdata/R/interleave.R, trunk/gdata/R/nobs.R,
	  trunk/gdata/man/aggregate.table.Rd, trunk/gdata/man/combine.Rd,
	  trunk/gdata/man/interleave.Rd, trunk/gdata/man/nobs.Rd,
	  trunk/gdata/man/rename.vars.Rd, trunk/gdata/man/reorder.Rd,
	  trunk/gmodels/R/ci.R, trunk/gmodels/man/estimable.Rd,
	  trunk/gmodels/man/glh.test.Rd, R/boxplot.n.R, R/hist2d.R,
	  R/lowess.R, R/residplot.R, man/bandplot.Rd, man/hist2d.Rd,
	  man/lowess.Rd, man/plotCI.Rd, man/space.Rd,
	  trunk/gtools/man/combinations.Rd, trunk/gtools/man/quantcut.Rd: -
	  Modified all files to include CVS Id and Log tags.
	* [r116] trunk/gmodels/R/CrossTable.R,
	  trunk/gmodels/man/CrossTable.Rd, R/barplot2.R, man/barplot2.Rd,
	  trunk/gregmisc/DESCRIPTION, trunk/gtools/R/combinations.R: -
	  Added CrossTable() and barplot2() code and docs contributed by
	  Marc Schwartz. - Permit combinations() to be used when r>n
	  provided repeat.allowed=TRUE - Bumped up version number

2002-08-01  warnes

	* [r114] trunk/gmodels/R/ci.R, trunk/gmodels/man/ci.Rd,
	  trunk/gmodels/man/estimable.Rd, trunk/gmodels/man/glh.test.Rd,
	  R/hist2d.R, R/wapply.R, trunk/gregmisc/DESCRIPTION,
	  trunk/gtools/R/running.R: - Corrected documentation mismatch for
	  ci, ci.default.
	  
	  - Replaced all occurences of '_' for assignment with '<-'.
	  
	  - Replaced all occurences of 'T' or 'F' for 'TRUE' and 'FALSE'
	  with the spelled out version.
	  
	  - Updaded version number and date.

2002-04-09  warneg

	* [r109] trunk/gdata/R/rename.vars.R,
	  trunk/gdata/man/aggregate.table.Rd,
	  trunk/gdata/man/interleave.Rd, trunk/gdata/man/reorder.Rd,
	  trunk/gmodels/R/ci.R, trunk/gmodels/R/estimable.R,
	  trunk/gmodels/R/glh.test.R, trunk/gmodels/man/glh.test.Rd,
	  R/bandplot.R, R/boxplot.n.R, R/hist2d.R, R/plot.lm.R, R/plotCI.R,
	  R/plotmeans.R, R/residplot.R, R/space.R, R/wapply.R,
	  man/bandplot.Rd, man/boxplot.n.Rd, man/hist2d.Rd,
	  man/plotmeans.Rd, man/space.Rd, man/wapply.Rd,
	  trunk/gregmisc/DESCRIPTION, trunk/gtools/R/combinations.R,
	  trunk/gtools/man/combinations.Rd, trunk/gtools/man/running.Rd:
	  Checkin for version 0.5.3

2002-03-27  warneg

	* [r107] man/lowess.Rd: Added "..." argument to lowess.default.
	* [r106] R/lowess.R: - Added code to append "..." to the argument
	  list of lowess.default.
	  
	  - Fixed a wrong default for f in lowess.formula. Was 3, but
	  should have been 2/3.

2002-03-26  warneg

	* [r104] trunk/gdata/man/reorder.Rd, trunk/gmodels/R/ci.R,
	  trunk/gmodels/R/glh.test.R, trunk/gmodels/man/ci.Rd,
	  trunk/gmodels/man/glh.test.Rd, R/lowess.R, man/lowess.Rd: -
	  Changed methods to include '...' to match the generic. - Updated
	  for version 0.5.1
	* [r100] man/hist2d.Rd: Initial checkin.

2002-03-20  warneg

	* [r94] R/plotmeans.R: - Changes to add compatibility with S-Plus
	  2000
	* [r93] R/plotCI.R: - Changes to add compatibility with S-Plus
	  2000.
	* [r92] R/boxplot.n.R: - Updated to work in S-Plus 2000 as well as
	  R.

2002-03-05  warneg

	* [r88] R/plotmeans.R: - Replace "T" with "TRUE". Problems arrive
	  when there is a variable named "T".

2002-02-20  warneg

	* [r81] trunk/gdata/man/rename.vars.Rd, trunk/gmodels/man/ci.Rd,
	  trunk/gmodels/man/estimable.Rd, trunk/gmodels/man/glh.test.Rd,
	  man/lowess.Rd, man/plotCI.Rd, man/space.Rd: Minor changes, typo
	  and formatting fixes.
	* [r80] R/bandplot.R, man/bandplot.Rd: - Generalized to allow
	  specification of the multiples of the standard deviation levels
	  to be plotted (0=mean, 1=1 sd, ..). - Now (invisibly) returnes
	  computed smooths.

2002-02-16  warneg

	* [r78] man/bandplot.Rd: Added bandplot documentation.
	* [r77] R/wapply.R: - Fixed Bug: When method=="range", the absolute
	  range of x was being used to compute the relative width instead
	  of the (correct) relative range.
	* [r76] R/wapply.R: - Corrected problem removing missing values:
	  The missing values of $x and $y were being removed
	  indepdendently, leaving an uneven number of points in the result.

2002-02-04  warneg

	* [r74] R/space.R: - Add na.rm parameter and make the default TRUE.
	* [r73] R/hist2d.R: Initial checkin.
	* [r72] R/plotCI.R: - When err="x", 'col' was being used to plot
	  bars, rather than 'barcol'.
	* [r71] R/plotCI.R: - fixed typo, when err="x", lty was 'slty'
	  causing an error.

2001-12-12  warneg

	* [r54] man/space.Rd: - Quoted underscore character in my email
	  address. - Added correct keyword.
	* [r52] man/plotmeans.Rd: Added documentation for xaxt parameter.
	* [r51] R/lowess.R: Updated to explicitly list control arguments to
	  lowess.formula.
	* [r50] man/lowess.Rd: Initial checkin. Code copied from R source
	  package and extended.

2001-12-07  warneg

	* [r46] man/wapply.Rd: Fixed an problem where \code was incorrectly
	  delimited by parens rather than curly brackets.
	* [r42] R/lowess.R, R/plot.lm.R, R/residplot.R, man/space.Rd:
	  Initial checkin.
	* [r41] R/space.R: - Added cvs tags.
	* [r40] R/space.R: - Leave first point at center, rather than
	  shifting by s/2 to the left. This looks better when there are
	  more than 2 'spaced' points.

2001-12-05  warneg

	* [r33] R/plotmeans.R: - Added ability to use the t-distribution to
	  compute confidence intervals. This is controlled using the
	  'use.t' parameter.
	* [r31] man/plotmeans.Rd: - Added documentation of use.t parameter.
	* [r30] man/wapply.Rd: - Clarified how the width of the window is
	  computed when method="nobs".
	* [r29] R/wapply.R: - Added a better default for "width" when
	  method="nobs". For this case, width=max(5, length(x)/10).
	  
	  - Allow omission of x values which result in missing y values via
	  'drop.na' parameter.

2001-10-26  warneg

	* [r28] R/plotmeans.R: Added correct handling of 'xaxt="n"'.

2001-10-16  warneg

	* [r27] trunk/gmodels/man/ci.Rd, man/wapply.Rd: Fixed unbalanced
	  brace.
	* [r26] man/plotCI.Rd: Added minbar and maxbar parameters.
	* [r25] man/plotmeans.Rd: Forgot to add minbar and maxbar to usage
	  section.
	* [r24] man/plotmeans.Rd: Added description of minbar and maxbar.
	* [r23] R/plotCI.R: - Added minbar and maxbar parameters - Added
	  cvs id and log tags to header
	* [r22] R/plotmeans.R: Added cvs id and log tag to file header
	* [r21] R/plotmeans.R: Added minbar and maxbar parameters.
	* [r20] man/plotmeans.Rd: Added description of minsd parameter.
	* [r19] R/plotmeans.R: Added minsd parameter.

2001-09-18  warneg

	* [r18] R/plotCI.R, R/plotmeans.R, trunk/gregmisc/DESCRIPTION,
	  trunk/gtools/R/RSCompat.S: Release 0.3.2

2001-09-01  warneg

	* [r16] man/wapply.Rd, trunk/gregmisc/DESCRIPTION,
	  trunk/gtools/R/running.R, trunk/gtools/man/running.Rd: Release
	  0.3.0

2001-08-31  warneg

	* [r15] R/wapply.R: Used wrong character in header (% instead of
	  #). Fixed.
	* [r14] R/bandplot.R: Used wrong comment character (% instead of #)
	  in header. Fixed.

2001-08-25  warneg

	* [r10] R/wapply.R: Initial checkin.
	* [r9] man/boxplot.n.Rd, man/plotmeans.Rd: Added CVS header.
	* [r8] man/wapply.Rd: Initial Checkin

2001-05-30  warneg

	* [r2] trunk/gmodels, trunk/gmodels/R, trunk/gmodels/R/ci.R,
	  trunk/gmodels/man, trunk/gmodels/man/ci.Rd, ., R, R/boxplot.n.R,
	  R/plotCI.R, R/plotmeans.R, man, man/boxplot.n.Rd, man/plotCI.Rd,
	  man/plotmeans.Rd, trunk/gregmisc, trunk/gregmisc/DESCRIPTION:
	  Initial revision