"""Caching loader for the 20 newsgroups text classification dataset The description of the dataset is available on the official website at: http://people.csail.mit.edu/jrennie/20Newsgroups/ Quoting the introduction: The 20 Newsgroups data set is a collection of approximately 20,000 newsgroup documents, partitioned (nearly) evenly across 20 different newsgroups. To the best of my knowledge, it was originally collected by Ken Lang, probably for his Newsweeder: Learning to filter netnews paper, though he does not explicitly mention this collection. The 20 newsgroups collection has become a popular data set for experiments in text applications of machine learning techniques, such as text classification and text clustering. This dataset loader will download the recommended "by date" variant of the dataset and which features a point in time split between the train and test sets. The compressed dataset size is around 14 Mb compressed. Once uncompressed the train set is 52 MB and the test set is 34 MB. The data is downloaded, extracted and cached in the '~/scikit_learn_data' folder. The `fetch_20newsgroups` function will not vectorize the data into numpy arrays but the dataset lists the filenames of the posts and their categories as target labels. The `fetch_20newsgroups_vectorized` function will in addition do a simple tf-idf vectorization step. """ # Copyright (c) 2011 Olivier Grisel # License: BSD 3 clause import os import logging import tarfile import pickle import shutil import re import codecs import numpy as np import scipy.sparse as sp from .base import get_data_home from .base import Bunch from .base import load_files from .base import _pkl_filepath from ..utils import check_random_state from ..feature_extraction.text import CountVectorizer from ..preprocessing import normalize from ..externals import joblib, six if six.PY3: from urllib.request import urlopen else: from urllib2 import urlopen logger = logging.getLogger(__name__) URL = ("http://people.csail.mit.edu/jrennie/" "20Newsgroups/20news-bydate.tar.gz") ARCHIVE_NAME = "20news-bydate.tar.gz" CACHE_NAME = "20news-bydate.pkz" TRAIN_FOLDER = "20news-bydate-train" TEST_FOLDER = "20news-bydate-test" def download_20newsgroups(target_dir, cache_path): """Download the 20 newsgroups data and stored it as a zipped pickle.""" archive_path = os.path.join(target_dir, ARCHIVE_NAME) train_path = os.path.join(target_dir, TRAIN_FOLDER) test_path = os.path.join(target_dir, TEST_FOLDER) if not os.path.exists(target_dir): os.makedirs(target_dir) if os.path.exists(archive_path): # Download is not complete as the .tar.gz file is removed after # download. logger.warning("Download was incomplete, downloading again.") os.remove(archive_path) logger.warning("Downloading dataset from %s (14 MB)", URL) opener = urlopen(URL) with open(archive_path, 'wb') as f: f.write(opener.read()) logger.info("Decompressing %s", archive_path) tarfile.open(archive_path, "r:gz").extractall(path=target_dir) os.remove(archive_path) # Store a zipped pickle cache = dict(train=load_files(train_path, encoding='latin1'), test=load_files(test_path, encoding='latin1')) compressed_content = codecs.encode(pickle.dumps(cache), 'zlib_codec') with open(cache_path, 'wb') as f: f.write(compressed_content) shutil.rmtree(target_dir) return cache def strip_newsgroup_header(text): """ Given text in "news" format, strip the headers, by removing everything before the first blank line. """ _before, _blankline, after = text.partition('\n\n') return after _QUOTE_RE = re.compile(r'(writes in|writes:|wrote:|says:|said:' r'|^In article|^Quoted from|^\||^>)') def strip_newsgroup_quoting(text): """ Given text in "news" format, strip lines beginning with the quote characters > or |, plus lines that often introduce a quoted section (for example, because they contain the string 'writes:'.) """ good_lines = [line for line in text.split('\n') if not _QUOTE_RE.search(line)] return '\n'.join(good_lines) def strip_newsgroup_footer(text): """ Given text in "news" format, attempt to remove a signature block. As a rough heuristic, we assume that signatures are set apart by either a blank line or a line made of hyphens, and that it is the last such line in the file (disregarding blank lines at the end). """ lines = text.strip().split('\n') for line_num in range(len(lines) - 1, -1, -1): line = lines[line_num] if line.strip().strip('-') == '': break if line_num > 0: return '\n'.join(lines[:line_num]) else: return text def fetch_20newsgroups(data_home=None, subset='train', categories=None, shuffle=True, random_state=42, remove=(), download_if_missing=True): """Load the filenames and data from the 20 newsgroups dataset. Read more in the :ref:`User Guide <20newsgroups>`. Parameters ---------- subset: 'train' or 'test', 'all', optional Select the dataset to load: 'train' for the training set, 'test' for the test set, 'all' for both, with shuffled ordering. data_home: optional, default: None Specify a download and cache folder for the datasets. If None, all scikit-learn data is stored in '~/scikit_learn_data' subfolders. categories: None or collection of string or unicode If None (default), load all the categories. If not None, list of category names to load (other categories ignored). shuffle: bool, optional Whether or not to shuffle the data: might be important for models that make the assumption that the samples are independent and identically distributed (i.i.d.), such as stochastic gradient descent. random_state: numpy random number generator or seed integer Used to shuffle the dataset. download_if_missing: optional, True by default If False, raise an IOError if the data is not locally available instead of trying to download the data from the source site. remove: tuple May contain any subset of ('headers', 'footers', 'quotes'). Each of these are kinds of text that will be detected and removed from the newsgroup posts, preventing classifiers from overfitting on metadata. 'headers' removes newsgroup headers, 'footers' removes blocks at the ends of posts that look like signatures, and 'quotes' removes lines that appear to be quoting another post. 'headers' follows an exact standard; the other filters are not always correct. """ data_home = get_data_home(data_home=data_home) cache_path = _pkl_filepath(data_home, CACHE_NAME) twenty_home = os.path.join(data_home, "20news_home") cache = None if os.path.exists(cache_path): try: with open(cache_path, 'rb') as f: compressed_content = f.read() uncompressed_content = codecs.decode( compressed_content, 'zlib_codec') cache = pickle.loads(uncompressed_content) except Exception as e: print(80 * '_') print('Cache loading failed') print(80 * '_') print(e) if cache is None: if download_if_missing: cache = download_20newsgroups(target_dir=twenty_home, cache_path=cache_path) else: raise IOError('20Newsgroups dataset not found') if subset in ('train', 'test'): data = cache[subset] elif subset == 'all': data_lst = list() target = list() filenames = list() for subset in ('train', 'test'): data = cache[subset] data_lst.extend(data.data) target.extend(data.target) filenames.extend(data.filenames) data.data = data_lst data.target = np.array(target) data.filenames = np.array(filenames) else: raise ValueError( "subset can only be 'train', 'test' or 'all', got '%s'" % subset) data.description = 'the 20 newsgroups by date dataset' if 'headers' in remove: data.data = [strip_newsgroup_header(text) for text in data.data] if 'footers' in remove: data.data = [strip_newsgroup_footer(text) for text in data.data] if 'quotes' in remove: data.data = [strip_newsgroup_quoting(text) for text in data.data] if categories is not None: labels = [(data.target_names.index(cat), cat) for cat in categories] # Sort the categories to have the ordering of the labels labels.sort() labels, categories = zip(*labels) mask = np.in1d(data.target, labels) data.filenames = data.filenames[mask] data.target = data.target[mask] # searchsorted to have continuous labels data.target = np.searchsorted(labels, data.target) data.target_names = list(categories) # Use an object array to shuffle: avoids memory copy data_lst = np.array(data.data, dtype=object) data_lst = data_lst[mask] data.data = data_lst.tolist() if shuffle: random_state = check_random_state(random_state) indices = np.arange(data.target.shape[0]) random_state.shuffle(indices) data.filenames = data.filenames[indices] data.target = data.target[indices] # Use an object array to shuffle: avoids memory copy data_lst = np.array(data.data, dtype=object) data_lst = data_lst[indices] data.data = data_lst.tolist() return data def fetch_20newsgroups_vectorized(subset="train", remove=(), data_home=None): """Load the 20 newsgroups dataset and transform it into tf-idf vectors. This is a convenience function; the tf-idf transformation is done using the default settings for `sklearn.feature_extraction.text.Vectorizer`. For more advanced usage (stopword filtering, n-gram extraction, etc.), combine fetch_20newsgroups with a custom `Vectorizer` or `CountVectorizer`. Read more in the :ref:`User Guide <20newsgroups>`. Parameters ---------- subset: 'train' or 'test', 'all', optional Select the dataset to load: 'train' for the training set, 'test' for the test set, 'all' for both, with shuffled ordering. data_home: optional, default: None Specify an download and cache folder for the datasets. If None, all scikit-learn data is stored in '~/scikit_learn_data' subfolders. remove: tuple May contain any subset of ('headers', 'footers', 'quotes'). Each of these are kinds of text that will be detected and removed from the newsgroup posts, preventing classifiers from overfitting on metadata. 'headers' removes newsgroup headers, 'footers' removes blocks at the ends of posts that look like signatures, and 'quotes' removes lines that appear to be quoting another post. Returns ------- bunch : Bunch object bunch.data: sparse matrix, shape [n_samples, n_features] bunch.target: array, shape [n_samples] bunch.target_names: list, length [n_classes] """ data_home = get_data_home(data_home=data_home) filebase = '20newsgroup_vectorized' if remove: filebase += 'remove-' + ('-'.join(remove)) target_file = _pkl_filepath(data_home, filebase + ".pkl") # we shuffle but use a fixed seed for the memoization data_train = fetch_20newsgroups(data_home=data_home, subset='train', categories=None, shuffle=True, random_state=12, remove=remove) data_test = fetch_20newsgroups(data_home=data_home, subset='test', categories=None, shuffle=True, random_state=12, remove=remove) if os.path.exists(target_file): X_train, X_test = joblib.load(target_file) else: vectorizer = CountVectorizer(dtype=np.int16) X_train = vectorizer.fit_transform(data_train.data).tocsr() X_test = vectorizer.transform(data_test.data).tocsr() joblib.dump((X_train, X_test), target_file, compress=9) # the data is stored as int16 for compactness # but normalize needs floats X_train = X_train.astype(np.float64) X_test = X_test.astype(np.float64) normalize(X_train, copy=False) normalize(X_test, copy=False) target_names = data_train.target_names if subset == "train": data = X_train target = data_train.target elif subset == "test": data = X_test target = data_test.target elif subset == "all": data = sp.vstack((X_train, X_test)).tocsr() target = np.concatenate((data_train.target, data_test.target)) else: raise ValueError("%r is not a valid subset: should be one of " "['train', 'test', 'all']" % subset) return Bunch(data=data, target=target, target_names=target_names)