"""Unsupervised nearest neighbors learner""" from .base import NeighborsBase from .base import KNeighborsMixin from .base import RadiusNeighborsMixin from .base import UnsupervisedMixin class NearestNeighbors(NeighborsBase, KNeighborsMixin, RadiusNeighborsMixin, UnsupervisedMixin): """Unsupervised learner for implementing neighbor searches. Read more in the :ref:`User Guide `. Parameters ---------- n_neighbors : int, optional (default = 5) Number of neighbors to use by default for :meth:`k_neighbors` queries. radius : float, optional (default = 1.0) Range of parameter space to use by default for :meth`radius_neighbors` queries. algorithm : {'auto', 'ball_tree', 'kd_tree', 'brute'}, optional Algorithm used to compute the nearest neighbors: - 'ball_tree' will use :class:`BallTree` - 'kd_tree' will use :class:`KDtree` - 'brute' will use a brute-force search. - 'auto' will attempt to decide the most appropriate algorithm based on the values passed to :meth:`fit` method. Note: fitting on sparse input will override the setting of this parameter, using brute force. leaf_size : int, optional (default = 30) Leaf size passed to BallTree or KDTree. This can affect the speed of the construction and query, as well as the memory required to store the tree. The optimal value depends on the nature of the problem. p: integer, optional (default = 2) Parameter for the Minkowski metric from sklearn.metrics.pairwise.pairwise_distances. When p = 1, this is equivalent to using manhattan_distance (l1), and euclidean_distance (l2) for p = 2. For arbitrary p, minkowski_distance (l_p) is used. metric : string or callable, default 'minkowski' metric to use for distance computation. Any metric from scikit-learn or scipy.spatial.distance can be used. If metric is a callable function, it is called on each pair of instances (rows) and the resulting value recorded. The callable should take two arrays as input and return one value indicating the distance between them. This works for Scipy's metrics, but is less efficient than passing the metric name as a string. Distance matrices are not supported. Valid values for metric are: - from scikit-learn: ['cityblock', 'cosine', 'euclidean', 'l1', 'l2', 'manhattan'] - from scipy.spatial.distance: ['braycurtis', 'canberra', 'chebyshev', 'correlation', 'dice', 'hamming', 'jaccard', 'kulsinski', 'mahalanobis', 'matching', 'minkowski', 'rogerstanimoto', 'russellrao', 'seuclidean', 'sokalmichener', 'sokalsneath', 'sqeuclidean', 'yule'] See the documentation for scipy.spatial.distance for details on these metrics. metric_params : dict, optional (default = None) Additional keyword arguments for the metric function. n_jobs : int, optional (default = 1) The number of parallel jobs to run for neighbors search. If ``-1``, then the number of jobs is set to the number of CPU cores. Affects only :meth:`k_neighbors` and :meth:`kneighbors_graph` methods. Examples -------- >>> import numpy as np >>> from sklearn.neighbors import NearestNeighbors >>> samples = [[0, 0, 2], [1, 0, 0], [0, 0, 1]] >>> neigh = NearestNeighbors(2, 0.4) >>> neigh.fit(samples) #doctest: +ELLIPSIS NearestNeighbors(...) >>> neigh.kneighbors([[0, 0, 1.3]], 2, return_distance=False) ... #doctest: +ELLIPSIS array([[2, 0]]...) >>> nbrs = neigh.radius_neighbors([[0, 0, 1.3]], 0.4, return_distance=False) >>> np.asarray(nbrs[0][0]) array(2) See also -------- KNeighborsClassifier RadiusNeighborsClassifier KNeighborsRegressor RadiusNeighborsRegressor BallTree Notes ----- See :ref:`Nearest Neighbors ` in the online documentation for a discussion of the choice of ``algorithm`` and ``leaf_size``. http://en.wikipedia.org/wiki/K-nearest_neighbor_algorithm """ def __init__(self, n_neighbors=5, radius=1.0, algorithm='auto', leaf_size=30, metric='minkowski', p=2, metric_params=None, n_jobs=1, **kwargs): self._init_params(n_neighbors=n_neighbors, radius=radius, algorithm=algorithm, leaf_size=leaf_size, metric=metric, p=p, metric_params=metric_params, n_jobs=n_jobs, **kwargs)