Lists of 130 third-party dependencies.
     (Eclipse Public License - v 1.0) (GNU Lesser General Public License) Logback Classic Module (ch.qos.logback:logback-classic:1.2.3 - http://logback.qos.ch/logback-classic)
     (Eclipse Public License - v 1.0) (GNU Lesser General Public License) Logback Core Module (ch.qos.logback:logback-core:1.2.3 - http://logback.qos.ch/logback-core)
     (The Apache Software License, Version 2.0) JCommander (com.beust:jcommander:1.48 - http://beust.com/jcommander)
     (The Apache Software License, Version 2.0) Jackson-annotations (com.fasterxml.jackson.core:jackson-annotations:2.8.5 - http://github.com/FasterXML/jackson)
     (The Apache Software License, Version 2.0) Jackson-core (com.fasterxml.jackson.core:jackson-core:2.8.5 - https://github.com/FasterXML/jackson-core)
     (The Apache Software License, Version 2.0) jackson-databind (com.fasterxml.jackson.core:jackson-databind:2.8.5 - http://github.com/FasterXML/jackson)
     (The Apache Software License, Version 2.0) Jackson-dataformat-protobuf (com.fasterxml.jackson.dataformat:jackson-dataformat-protobuf:2.7.2 - http://wiki.fasterxml.com/JacksonExtensionProtobuf)
     (The Apache Software License, Version 2.0) Jackson-dataformat-YAML (com.fasterxml.jackson.dataformat:jackson-dataformat-yaml:2.5.4 - https://github.com/FasterXML/jackson)
     (The Apache Software License, Version 2.0) jackson-module-jsonSchema (com.fasterxml.jackson.module:jackson-module-jsonSchema:2.7.2 - https://github.com/FasterXML/jackson-module-jsonSchema)
     (Apache License, Version 2.0) Caffeine cache (com.github.ben-manes.caffeine:caffeine:2.5.6 - https://github.com/ben-manes/caffeine)
     (Revised BSD License) JSONLD Java :: Core (com.github.jsonld-java:jsonld-java:0.10.0 - http://github.com/jsonld-java/jsonld-java/jsonld-java/)
     (Revised BSD License) JSONLD Java :: Sesame Integration (com.github.jsonld-java:jsonld-java-sesame:0.5.1 - http://github.com/jsonld-java/jsonld-java/jsonld-java-integration/jsonld-java-sesame/)
     (The Apache Software License, Version 2.0) HPPC-RT Collections (com.github.vsonnier:hppcrt:0.7.5 - http://nexus.sonatype.org/oss-repository-hosting.html/hppcrt-parent/hppcrt)
     (The Apache Software License, Version 2.0) FindBugs-jsr305 (com.google.code.findbugs:jsr305:3.0.1 - http://findbugs.sourceforge.net/)
     (The Apache Software License, Version 2.0) Gson (com.google.code.gson:gson:2.2.4 - http://code.google.com/p/google-gson/)
     (The Apache Software License, Version 2.0) Guava: Google Core Libraries for Java (com.google.guava:guava:18.0 - http://code.google.com/p/guava-libraries/guava)
     (Apache 2) JavaEWAH (com.googlecode.javaewah:JavaEWAH:0.7.7 - http://code.google.com/p/javaewah/)
     (MIT License) jackson-jsonld (com.io-informatics.oss:jackson-jsonld:0.0.5 - https://github.com/io-informatics/jackson-jsonld)
     (Apache 2.0) ProtoParser (com.squareup:protoparser:4.0.0 - http://github.com/square/protoparser/)
     (The Apache Software License, Version 2.0) Commons Codec (commons-codec:commons-codec:1.5 - http://commons.apache.org/codec/)
     (Apache License) HttpClient (commons-httpclient:commons-httpclient:3.1 - http://jakarta.apache.org/httpcomponents/httpclient-3.x/)
     (The Apache Software License, Version 2.0) Commons IO (commons-io:commons-io:2.2 - http://commons.apache.org/io/)
     (The Apache Software License, Version 2.0) Commons Lang (commons-lang:commons-lang:2.6 - http://commons.apache.org/lang/)
     (The Apache Software License, Version 2.0) Commons Logging (commons-logging:commons-logging:1.1.3 - http://commons.apache.org/proper/commons-logging/)
     (Unknown license) SPARQL-DL API (de.derivo:sparqldl-api:1.0.0 - http://www.derivo.de/en/resources/sparql-dl-api/)
     (BSD) Automaton (dk.brics.automaton:automaton:1.11-8 - http://www.brics.dk/automaton/)
     (The Apache Software License, Version 2.0) javax.inject (javax.inject:javax.inject:1 - http://code.google.com/p/atinject/)
     (Unknown license) servlet-api (javax.servlet:servlet-api:2.5 - no url defined)
     (The Apache Software License, Version 2.0) Bean Validation API (javax.validation:validation-api:1.1.0.Final - http://beanvalidation.org)
     (http://jaxen.codehaus.org/license.html) jaxen (jaxen:jaxen:1.1.4 - http://jaxen.codehaus.org/)
     (BSD) JLine (jline:jline:0.9.93 - http://jline.sourceforge.net)
     (Unknown license) jpaul (jpaul:jpaul:2.5.1 - http://jpaul.sourceforge.net/)
     (Eclipse Public License 1.0) JUnit (junit:junit:4.12 - http://junit.org)
     (The Apache Software License, Version 2.0) Apache Log4j (log4j:log4j:1.2.17 - http://logging.apache.org/log4j/1.2/)
     (GNU Lesser General Public License 2.1) GNU Trove (net.sf.trove4j:trove4j:3.0.3 - http://trove4j.sf.net)
     (BSD) (LGPL) HermiT (net.sourceforge.owlapi:org.semanticweb.hermit:1.3.8.413 - http://hermit-reasoner.com/)
     (Apache License Version 2.0, January 2004) (GNU LGPL Version 3.0) OWLAPI :: Interfaces (net.sourceforge.owlapi:owlapi-api:4.5.6 - http://owlcs.github.io/owlapi/owlapi-api/)
     (Apache License Version 2.0, January 2004) (GNU LGPL Version 3.0) OWLAPI Binding and Config (net.sourceforge.owlapi:owlapi-apibinding:4.5.6 - http://owlcs.github.io/owlapi/owlapi-apibinding/)
     (Apache License Version 2.0, January 2004) (GNU LGPL Version 3.0) compatibility (net.sourceforge.owlapi:owlapi-compatibility:4.5.6 - http://owlcs.github.io/owlapi/owlapi-compatibility/)
     (Apache License Version 2.0, January 2004) (GNU LGPL Version 3.0) OWLAPI :: Distribution (net.sourceforge.owlapi:owlapi-distribution:4.5.6 - http://owlcs.github.io/owlapi/owlapi-distribution/)
     (Apache License Version 2.0, January 2004) (GNU LGPL Version 3.0) OWLAPITOOLS OWL profile and fixers (net.sourceforge.owlapi:owlapi-fixers:4.5.6 - http://owlcs.github.io/owlapi/owlapi-fixers/)
     (Apache License Version 2.0, January 2004) (GNU LGPL Version 3.0) OWLAPI Default Implementation (net.sourceforge.owlapi:owlapi-impl:4.5.6 - http://owlcs.github.io/owlapi/owlapi-impl/)
     (The BSD 3-Clause License) oboformat parser (net.sourceforge.owlapi:owlapi-oboformat:4.5.6 - https://github.com/owlcollab/oboformat/)
     (Apache License Version 2.0, January 2004) (GNU LGPL Version 3.0) parsers (net.sourceforge.owlapi:owlapi-parsers:4.5.6 - http://owlcs.github.io/owlapi/owlapi-parsers/)
     (Apache License Version 2.0, January 2004) (GNU LGPL Version 3.0) OWLAPI :: Sesame Rio module (net.sourceforge.owlapi:owlapi-rio:4.5.6 - http://owlcs.github.io/owlapi/owlapi-rio/)
     (Apache License Version 2.0, January 2004) (GNU LGPL Version 3.0) tools (net.sourceforge.owlapi:owlapi-tools:4.5.6 - http://owlcs.github.io/owlapi/owlapi-tools/)
     (The Apache Software License, Version 2.0) Apache Ant Core (org.apache.ant:ant:1.8.2 - http://ant.apache.org/ant/)
     (The Apache Software License, Version 2.0) Apache Ant Launcher (org.apache.ant:ant-launcher:1.8.2 - http://ant.apache.org/ant-launcher/)
     (The Apache Software License, Version 2.0) Commons Lang (org.apache.commons:commons-lang3:3.1 - http://commons.apache.org/lang/)
     (The Apache Software License, Version 2.0) Commons Math (org.apache.commons:commons-math:2.1 - http://commons.apache.org/math/)
     (The Apache Software License, Version 2.0) Apache Commons Math (org.apache.commons:commons-math3:3.3 - http://commons.apache.org/proper/commons-math/)
     (The Apache Software License, Version 2.0) Activation 1.1 (org.apache.geronimo.specs:geronimo-activation_1.1_spec:1.1 - http://geronimo.apache.org/maven/specs/geronimo-activation_1.1_spec/1.1)
     (The Apache Software License, Version 2.0) JavaMail 1.4 (org.apache.geronimo.specs:geronimo-javamail_1.4_spec:1.7.1 - http://geronimo.apache.org/maven/specs/geronimo-javamail_1.4_spec/1.7.1)
     (The Apache Software License, Version 2.0) Streaming API for XML (STAX API 1.0) (org.apache.geronimo.specs:geronimo-stax-api_1.0_spec:1.0.1 - http://geronimo.apache.org/specs/geronimo-stax-api_1.0_spec)
     (Apache License, Version 2.0) Apache HttpClient Fluent API (org.apache.httpcomponents:fluent-hc:4.5.3 - http://hc.apache.org/httpcomponents-client)
     (Apache License, Version 2.0) Apache HttpClient (org.apache.httpcomponents:httpclient:4.5.3 - http://hc.apache.org/httpcomponents-client)
     (Apache License, Version 2.0) Apache HttpClient Cache (org.apache.httpcomponents:httpclient-cache:4.5.3 - http://hc.apache.org/httpcomponents-client)
     (Apache License, Version 2.0) Apache HttpClient OSGi bundle (org.apache.httpcomponents:httpclient-osgi:4.5.3 - http://hc.apache.org/httpcomponents-client)
     (Apache License, Version 2.0) Apache HttpCore (org.apache.httpcomponents:httpcore:4.4.6 - http://hc.apache.org/httpcomponents-core-ga)
     (Apache License, Version 2.0) Apache HttpCore NIO (org.apache.httpcomponents:httpcore-nio:4.4.6 - http://hc.apache.org/httpcomponents-core-ga)
     (Apache License, Version 2.0) Apache HttpCore OSGi bundle (org.apache.httpcomponents:httpcore-osgi:4.4.6 - http://hc.apache.org/httpcomponents-core-ga)
     (Apache License, Version 2.0) Apache HttpClient Mime (org.apache.httpcomponents:httpmime:4.5.3 - http://hc.apache.org/httpcomponents-client)
     (The Apache Software License, Version 2.0) Apache JAMES Mime4j (Core) (org.apache.james:apache-mime4j-core:0.7.2 - http://james.apache.org/mime4j/apache-mime4j-core)
     (The Apache Software License, Version 2.0) Apache Jena - Core (org.apache.jena:jena-core:2.11.2 - http://jena.apache.org/jena-core/)
     (The Apache Software License, Version 2.0) Apache Jena - IRI (org.apache.jena:jena-iri:1.0.2 - http://jena.apache.org/jena-iri/)
     (Apache 2) Apache Solr Solrj (org.apache.solr:solr-solrj:3.6.0 - http://lucene.apache.org/java/solr-parent/solr-solrj)
     (The Apache Software License, Version 2.0) Axiom API (org.apache.ws.commons.axiom:axiom-api:1.2.14 - http://ws.apache.org/axiom/)
     (The Apache Software License, Version 2.0) Axiom C14N (org.apache.ws.commons.axiom:axiom-c14n:1.2.14 - http://ws.apache.org/axiom/)
     (The Apache Software License, Version 2.0) Axiom DOM (org.apache.ws.commons.axiom:axiom-dom:1.2.14 - http://ws.apache.org/axiom/)
     (The Apache Software License, Version 2.0) Axiom Impl (org.apache.ws.commons.axiom:axiom-impl:1.2.14 - http://ws.apache.org/axiom/)
     (Unknown license) OWLTools-Annotation (org.bbop:OWLTools-Annotation:0.3.0-20160525.202501-2 - https://github.com/owlcollab/OWLTools-Annotation)
     (Unknown license) OWLTools-Core (org.bbop:OWLTools-Core:0.3.0-20160525.202443-2 - https://github.com/owlcollab/OWLTools-Core)
     (Unknown license) OWLTools-Oort (org.bbop:OWLTools-Oort:0.3.0-20160525.202517-2 - https://github.com/owlcollab/OWLTools-Oort)
     (Unknown license) OWLTools-Sim (org.bbop:OWLTools-Sim:0.3.0-20160525.202528-2 - https://github.com/owlcollab/OWLTools-Sim)
     (Unknown license) OWLTools-Solr (org.bbop:OWLTools-Solr:0.3.0-20160525.202554-2 - https://github.com/owlcollab/OWLTools-Solr)
     (Unknown license) OWLTools-Web (org.bbop:OWLTools-Web:0.3.0-20160525.202536-2 - https://github.com/owlcollab/OWLTools-Web)
     (The BSD 3-Clause License) oboformat-tools (org.bbop:oboformat-tools:0.7.3 - http://code.google.com/p/oboformat/)
     (The BSD License) Stax2 API (org.codehaus.woodstox:stax2-api:3.1.1 - http://woodstox.codehaus.org/StAX2)
     (The Apache Software License, Version 2.0) Woodstox (org.codehaus.woodstox:woodstox-core-asl:4.1.4 - http://woodstox.codehaus.org)
     (The Apache Software License, Version 2.0) Woodstox (org.codehaus.woodstox:wstx-asl:3.2.7 - http://woodstox.codehaus.org)
     (Apache Software License - Version 2.0) (Eclipse Public License - Version 1.0) Jetty :: Continuation (org.eclipse.jetty:jetty-continuation:7.5.4.v20111024 - http://www.eclipse.org/jetty/jetty-continuation)
     (Apache Software License - Version 2.0) (Eclipse Public License - Version 1.0) Jetty :: Http Utility (org.eclipse.jetty:jetty-http:7.5.4.v20111024 - http://www.eclipse.org/jetty/jetty-http)
     (Apache Software License - Version 2.0) (Eclipse Public License - Version 1.0) Jetty :: IO Utility (org.eclipse.jetty:jetty-io:7.5.4.v20111024 - http://www.eclipse.org/jetty/jetty-io)
     (Apache Software License - Version 2.0) (Eclipse Public License - Version 1.0) Jetty :: Server Core (org.eclipse.jetty:jetty-server:7.5.4.v20111024 - http://www.eclipse.org/jetty)
     (Apache Software License - Version 2.0) (Eclipse Public License - Version 1.0) Jetty :: Utilities (org.eclipse.jetty:jetty-util:7.5.4.v20111024 - http://www.eclipse.org/jetty/jetty-util)
     (Unknown license) Forester (org.forester:Forester:1.005 - https://code.google.com/p/forester/)
     (Unknown license) ExpressionMaterializingReasoner (org.geneontology:expression-materializing-reasoner:0.1.3 - no url defined)
     (The BSD 3-Clause License) org.geneontology:obographs (org.geneontology:obographs:0.1.0 - http://geneontology.org)
     (Unknown license) Lego (org.geneontology.lego:Lego:0.0.3-20160525.202545-2 - https://github.com/owlcollab/Lego)
     (New BSD License) Hamcrest Core (org.hamcrest:hamcrest-core:1.3 - https://github.com/hamcrest/JavaHamcrest/hamcrest-core)
     (Unknown license) JDOM (org.jdom:jdom:1.1.1 - http://www.jdom.org/)
     (Aduna BSD license) OpenRDF Sesame: Model (org.openrdf.sesame:sesame-model:2.7.16 - http://www.openrdf.org/sesame-core/sesame-model/)
     (Aduna BSD license) OpenRDF Sesame: Rio - API (org.openrdf.sesame:sesame-rio-api:2.7.16 - http://www.openrdf.org/sesame-core/sesame-rio/sesame-rio-api/)
     (Aduna BSD license) OpenRDF Sesame: Rio - Binary (org.openrdf.sesame:sesame-rio-binary:2.7.16 - http://www.openrdf.org/sesame-core/sesame-rio/sesame-rio-binary/)
     (Aduna BSD license) OpenRDF Sesame: Rio - Datatypes (org.openrdf.sesame:sesame-rio-datatypes:2.7.16 - http://www.openrdf.org/sesame-core/sesame-rio/sesame-rio-datatypes/)
     (Aduna BSD license) OpenRDF Sesame: Rio - Languages (org.openrdf.sesame:sesame-rio-languages:2.7.16 - http://www.openrdf.org/sesame-core/sesame-rio/sesame-rio-languages/)
     (Aduna BSD license) OpenRDF Sesame: Rio - N3 (writer-only) (org.openrdf.sesame:sesame-rio-n3:2.7.16 - http://www.openrdf.org/sesame-core/sesame-rio/sesame-rio-n3/)
     (Aduna BSD license) OpenRDF Sesame: Rio - N-Quads (org.openrdf.sesame:sesame-rio-nquads:2.7.16 - http://www.openrdf.org/sesame-core/sesame-rio/sesame-rio-nquads/)
     (Aduna BSD license) OpenRDF Sesame: Rio - N-Triples (org.openrdf.sesame:sesame-rio-ntriples:2.7.16 - http://www.openrdf.org/sesame-core/sesame-rio/sesame-rio-ntriples/)
     (Aduna BSD license) OpenRDF Sesame: Rio - RDF/JSON (org.openrdf.sesame:sesame-rio-rdfjson:2.7.16 - http://www.openrdf.org/sesame-core/sesame-rio/sesame-rio-rdfjson/)
     (Aduna BSD license) OpenRDF Sesame: Rio - RDF/XML (org.openrdf.sesame:sesame-rio-rdfxml:2.7.16 - http://www.openrdf.org/sesame-core/sesame-rio/sesame-rio-rdfxml/)
     (Aduna BSD license) OpenRDF Sesame: Rio - TriG (org.openrdf.sesame:sesame-rio-trig:2.7.16 - http://www.openrdf.org/sesame-core/sesame-rio/sesame-rio-trig/)
     (Aduna BSD license) OpenRDF Sesame: Rio - TriX (org.openrdf.sesame:sesame-rio-trix:2.7.16 - http://www.openrdf.org/sesame-core/sesame-rio/sesame-rio-trix/)
     (Aduna BSD license) OpenRDF Sesame: Rio - Turtle (org.openrdf.sesame:sesame-rio-turtle:2.7.16 - http://www.openrdf.org/sesame-core/sesame-rio/sesame-rio-turtle/)
     (Aduna BSD license) OpenRDF Sesame: util (org.openrdf.sesame:sesame-util:2.7.16 - http://www.openrdf.org/sesame-core/sesame-util/)
     (The BSD 3-Clause License) curie-util (org.prefixcommons:curie-util:0.0.2 - http://prefixcommons.org)
     (The Apache Software License, Version 2.0) ELK OWL Model Implementation (org.semanticweb.elk:elk-owl-implementation:0.4.3 - http://elk.semanticweb.org/elk-owl-parent/elk-owl-implementation/)
     (The Apache Software License, Version 2.0) ELK OWL Object Interfaces (org.semanticweb.elk:elk-owl-model:0.4.3 - http://elk.semanticweb.org/elk-owl-parent/elk-owl-model/)
     (The Apache Software License, Version 2.0) ELK OWL API Binding (org.semanticweb.elk:elk-owlapi:0.4.3 - http://elk.semanticweb.org/elk-owlapi/)
     (The Apache Software License, Version 2.0) ELK Reasoner (org.semanticweb.elk:elk-reasoner:0.4.3 - http://elk.semanticweb.org/elk-reasoner/)
     (The Apache Software License, Version 2.0) ELK Utilities Collections (org.semanticweb.elk:elk-util-collections:0.4.3 - http://elk.semanticweb.org/elk-util-parent/elk-util-collections/)
     (The Apache Software License, Version 2.0) ELK Common Utilities (org.semanticweb.elk:elk-util-common:0.4.3 - http://elk.semanticweb.org/elk-util-parent/elk-util-common/)
     (The Apache Software License, Version 2.0) ELK Utilities for Concurrency (org.semanticweb.elk:elk-util-concurrent:0.4.3 - http://elk.semanticweb.org/elk-util-parent/elk-util-concurrent/)
     (The Apache Software License, Version 2.0) ELK Utilities for Hashing (org.semanticweb.elk:elk-util-hashing:0.4.3 - http://elk.semanticweb.org/elk-util-parent/elk-util-hashing/)
     (The Apache Software License, Version 2.0) ELK Utilities for Input-Output (org.semanticweb.elk:elk-util-io:0.4.3 - http://elk.semanticweb.org/elk-util-parent/elk-util-io/)
     (The Apache Software License, Version 2.0) ELK Utilities for Logging (org.semanticweb.elk:elk-util-logging:0.4.3 - http://elk.semanticweb.org/elk-util-parent/elk-util-logging/)
     (Apache Public License 2.0) Semargl: Core (org.semarglproject:semargl-core:0.7 - http://semarglproject.org/semargl-core)
     (Apache Public License 2.0) Semargl: RDF (org.semarglproject:semargl-rdf:0.7 - http://semarglproject.org/semargl-rdf)
     (Apache Public License 2.0) Semargl: RDFa (org.semarglproject:semargl-rdfa:0.7 - http://semarglproject.org/semargl-rdfa)
     (Apache Public License 2.0) Semargl: Sesame Integration (org.semarglproject:semargl-sesame:0.7 - http://semarglproject.org/semargl-integration/semargl-sesame)
     (MIT License) JCL 1.1.1 implemented over SLF4J (org.slf4j:jcl-over-slf4j:1.7.10 - http://www.slf4j.org)
     (Apache Software Licenses) Log4j Implemented Over SLF4J (org.slf4j:log4j-over-slf4j:1.7.30 - http://www.slf4j.org)
     (MIT License) SLF4J API Module (org.slf4j:slf4j-api:1.7.10 - http://www.slf4j.org)
     (MIT License) SLF4J LOG4J-12 Binding (org.slf4j:slf4j-log4j12:1.7.6 - http://www.slf4j.org)
     (Public Domain) XZ for Java (org.tukaani:xz:1.6 - http://tukaani.org/xz/java.html)
     (Apache License Version 2.0) SnakeYAML (org.yaml:snakeyaml:1.10 - http://www.snakeyaml.org)
     (Mozilla Public License) Rhino (rhino:js:1.7R2 - http://www.mozilla.org/rhino/)
     (Unknown license) graphdraw (uk.ac.ebi.interpro:graphdraw:0.0.1-20110504.214648-1 - no url defined)
     (The Apache Software License, Version 2.0) Xerces2-j (xerces:xercesImpl:2.11.0 - https://xerces.apache.org/xerces2-j/)
     (The Apache Software License, Version 2.0) (The SAX License) (The W3C License) XML Commons External Components XML APIs (xml-apis:xml-apis:1.4.01 - http://xml.apache.org/commons/components/external/)